{ "type": "genome", "identifier": "GCA_945492685.1", "organism": "uncultured Methanomassiliicoccaceae bacterium", "title": "uncultured Methanomassiliicoccaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945492685.1", "bioproject": "PRJEB52589", "biosample": "SAMEA110310545", "wgs_master": "CALYUZ000000000.1", "refseq_category": "na", "taxid": "1963760", "species_taxid": "1963760", "organism_name": "uncultured Methanomassiliicoccaceae bacterium", "infraspecific_name": "", "isolate": "SRR7188232_bin.47_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/13", "asm_name": "SRR7188232_bin.47_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/492/685/GCA_945492685.1_SRR7188232_bin.47_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-13", "dateModified": "2022-07-13", "datePublished": "2022-07-13", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Methanomassiliicoccaceae bacterium" ], "sample_taxid": [ "1963760" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.299 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 59.55, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1052481", "Number of Sequences": "200", "Longest Sequences (bp)": "15348", "N50 (bp)": "5902", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.2", "Number of CDSs": "903", "Average Protein Length": "280.3", "Coding Ratio (%)": "72.1", "Number of rRNAs": "1", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 59.55, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016296195.1", "gtdb_species": "s__UBA71 sp016296195", "ani": 88.4754, "matched_fragments": 192, "total_fragments": 253, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017461225.1", "gtdb_species": "s__UBA71 sp017461225", "ani": 80.9905, "matched_fragments": 166, "total_fragments": 253, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017935945.1", "gtdb_species": "s__UBA71 sp017935945", "ani": 80.6433, "matched_fragments": 117, "total_fragments": 253, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "98.37", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.79", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009911715.1", "gtdb_species": "s__UBA71 sp006954425", "ani": 80.485, "matched_fragments": 143, "total_fragments": 253, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.86", "min_intra_species_ani": "96.86", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905187815.1", "gtdb_species": "s__UBA71 sp905187815", "ani": 80.1526, "matched_fragments": 144, "total_fragments": 253, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015063135.1", "gtdb_species": "s__UBA71 sp015063135", "ani": 79.988, "matched_fragments": 125, "total_fragments": 253, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "98.46", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_015063165.1", "gtdb_species": "s__UBA71 sp015063165", "ani": 79.8182, "matched_fragments": 111, "total_fragments": 253, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "96.86", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_006954465.1", "gtdb_species": "s__UBA71 sp006954465", "ani": 79.7174, "matched_fragments": 96, "total_fragments": 253, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.36", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.77", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002504405.1", "gtdb_species": "s__UBA71 sp002504405", "ani": 79.7071, "matched_fragments": 120, "total_fragments": 253, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016284295.1", "gtdb_species": "s__UBA71 sp016284295", "ani": 79.701, "matched_fragments": 118, "total_fragments": 253, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001563305.1", "gtdb_species": "s__UBA71 sp001563305", "ani": 79.6572, "matched_fragments": 113, "total_fragments": 253, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016297775.1", "gtdb_species": "s__SIG5 sp016297775", "ani": 78.4516, "matched_fragments": 62, "total_fragments": 253, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__SIG5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": 1577732.75, "gc_content": 52.4, "coding_genes": 1496.833, "rRNA16S_genes": 1.0, "tRNA_genes": 45.5, "gram_stain": null, "sporulation": 0.0, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Archaea", "p__Thermoplasmatota", "c__Thermoplasmata", "o__Methanomassiliicoccales", "f__Methanomethylophilaceae", "g__UBA71", "s__UBA71 sp945492685" ], "_genome_taxon": [ "uncultured", "Methanomassiliicoccaceae", "bacterium", "d__Archaea", "p__Thermoplasmatota", "c__Thermoplasmata", "o__Methanomassiliicoccales", "f__Methanomethylophilaceae", "g__UBA71", "s__UBA71 sp945492685", "Archaea", "Thermoplasmatota", "Thermoplasmata", "Methanomassiliicoccales", "Methanomethylophilaceae", "UBA71", "UBA71", "sp945492685" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }