{ "type": "genome", "identifier": "GCA_945787285.1", "organism": "uncultured Desulfuromonadales bacterium", "title": "uncultured Desulfuromonadales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF VIENNA", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945787285.1", "bioproject": "PRJEB54670", "biosample": "SAMEA110353820", "wgs_master": "CALZIC000000000.1", "refseq_category": "na", "taxid": "214038", "species_taxid": "214038", "organism_name": "uncultured Desulfuromonadales bacterium", "infraspecific_name": "", "isolate": "FO_M_Desulfobacterota_26", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "FO.M.Desulfobacterota.26", "submitter": "UNIVERSITY OF VIENNA", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/787/285/GCA_945787285.1_FO.M.Desulfobacterota.26", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Desulfuromonadales bacterium" ], "sample_taxid": [ "214038" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.146 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.79, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4021058", "Number of Sequences": "517", "Longest Sequences (bp)": "44812", "N50 (bp)": "10329", "Gap Ratio (%)": "0.025590", "GCcontent (%)": "58.5", "Number of CDSs": "3355", "Average Protein Length": "290.7", "Coding Ratio (%)": "72.8", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfuromonas versatilis", "strain": "strain=NIT-T3", "accession": "GCA_019704135.1", "taxid": 2802975, "species_taxid": 2802975, "relation_to_type": "type", "validated": true, "ani": 79.1604, "matched_fragments": 373, "total_fragments": 1070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas soudanensis", "strain": "strain=WTL", "accession": "GCA_001278055.1", "taxid": 1603606, "species_taxid": 1603606, "relation_to_type": "type", "validated": true, "ani": 78.5636, "matched_fragments": 277, "total_fragments": 1070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas acetexigens", "strain": "", "accession": "GCA_900111775.1", "taxid": 38815, "species_taxid": 38815, "relation_to_type": "type", "validated": true, "ani": 78.2387, "matched_fragments": 277, "total_fragments": 1070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas acetexigens", "strain": "strain=2873", "accession": "GCA_007051125.1", "taxid": 38815, "species_taxid": 38815, "relation_to_type": "type", "validated": true, "ani": 78.2248, "matched_fragments": 278, "total_fragments": 1070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geothermobacter ehrlichii", "strain": "strain=SS015", "accession": "GCA_008124615.1", "taxid": 213224, "species_taxid": 213224, "relation_to_type": "type", "validated": true, "ani": 77.72, "matched_fragments": 213, "total_fragments": 1070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geoalkalibacter halelectricus", "strain": "strain=SAP-1", "accession": "GCA_025263685.1", "taxid": 2847045, "species_taxid": 2847045, "relation_to_type": "type", "validated": true, "ani": 77.2549, "matched_fragments": 193, "total_fragments": 1070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Syntrophotalea carbinolica", "strain": "strain=DSM 2380", "accession": "GCA_000012885.1", "taxid": 19, "species_taxid": 19, "relation_to_type": "type", "validated": true, "ani": 76.8174, "matched_fragments": 93, "total_fragments": 1070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter grbiciae", "strain": "strain=DSM 13689", "accession": "GCA_018531165.1", "taxid": 155042, "species_taxid": 155042, "relation_to_type": "type", "validated": true, "ani": 76.81, "matched_fragments": 78, "total_fragments": 1070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter sulfurreducens", "strain": "strain=PCA", "accession": "GCA_000007985.2", "taxid": 35554, "species_taxid": 35554, "relation_to_type": "type", "validated": true, "ani": 76.555, "matched_fragments": 78, "total_fragments": 1070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter hydrogenophilus", "strain": "strain=DSM 13691", "accession": "GCA_018501225.1", "taxid": 40983, "species_taxid": 40983, "relation_to_type": "type", "validated": true, "ani": 76.3446, "matched_fragments": 83, "total_fragments": 1070, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelobacter propionicus", "strain": "strain=DSM 2379", "accession": "GCA_000015045.1", "taxid": 29543, "species_taxid": 29543, "relation_to_type": "type", "validated": true, "ani": 76.1376, "matched_fragments": 76, "total_fragments": 1070, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 78.79, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001278055.1", "gtdb_species": "s__Deferrimonas soudanensis", "ani": 78.5627, "matched_fragments": 277, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__WTL;g__Deferrimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001825565.1", "gtdb_species": "s__Trichloromonas sp001825565", "ani": 78.2387, "matched_fragments": 259, "total_fragments": 1070, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Trichloromonadaceae;g__Trichloromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900111775.1", 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