{ "type": "genome", "identifier": "GCA_945831355.1", "organism": "Lactobacillus equicursoris", "title": "Lactobacillus equicursoris", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945831355.1", "bioproject": "PRJEB52643", "biosample": "SAMEA110360227", "wgs_master": "CAMACE000000000.1", "refseq_category": "na", "taxid": "420645", "species_taxid": "420645", "organism_name": "Lactobacillus equicursoris", "infraspecific_name": "", "isolate": "SRR5240735_bin.16_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/12", "asm_name": "SRR5240735_bin.16_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/831/355/GCA_945831355.1_SRR5240735_bin.16_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-12", "dateModified": "2022-09-12", "datePublished": "2022-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactobacillus equicursoris" ], "sample_taxid": [ "420645" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.350 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 67.36, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1225134", "Number of Sequences": "179", "Longest Sequences (bp)": "27493", "N50 (bp)": "7964", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.5", "Number of CDSs": "1020", "Average Protein Length": "309.9", "Coding Ratio (%)": "77.4", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactobacillus equicursoris", "strain": "strain=DSM 19284", "accession": "GCA_001434815.1", "taxid": 420645, "species_taxid": 420645, "relation_to_type": "type", "validated": true, "ani": 98.068, "matched_fragments": 292, "total_fragments": 321, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactobacillus equicursoris", "strain": "strain=JCM 14600", "accession": "GCA_001311765.1", "taxid": 420645, "species_taxid": 420645, "relation_to_type": "type", "validated": true, "ani": 97.9851, "matched_fragments": 291, "total_fragments": 321, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactobacillus equicursoris", "strain": "strain=type strain:CIP 110162", "accession": "GCA_000312645.1", "taxid": 420645, "species_taxid": 420645, "relation_to_type": "type", "validated": true, "ani": 97.763, "matched_fragments": 278, "total_fragments": 321, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactobacillus delbrueckii subsp. sunkii", "strain": "strain=JCM 17838", "accession": "GCA_001888965.1", "taxid": 1050107, "species_taxid": 1584, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1341, "matched_fragments": 258, "total_fragments": 321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus delbrueckii subsp. sunkii", "strain": "strain=JCM 17838", "accession": "GCA_001190005.1", "taxid": 1050107, "species_taxid": 1584, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1239, "matched_fragments": 250, "total_fragments": 321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus delbrueckii subsp. delbrueckii", "strain": "strain=DSM 20074", "accession": "GCA_001433875.1", "taxid": 83684, "species_taxid": 1584, "relation_to_type": "suspected-type", "validated": true, "ani": 81.9067, "matched_fragments": 224, "total_fragments": 321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus delbrueckii subsp. bulgaricus", "strain": "strain=DSM 20081", "accession": "GCA_001437195.1", "taxid": 1585, "species_taxid": 1584, "relation_to_type": "type", "validated": true, "ani": 81.8735, "matched_fragments": 219, "total_fragments": 321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus delbrueckii subsp. delbrueckii", "strain": "strain=DSM 20074", "accession": "GCA_001908495.1", "taxid": 83684, "species_taxid": 1584, "relation_to_type": "type", "validated": true, "ani": 81.843, "matched_fragments": 232, "total_fragments": 321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus delbrueckii subsp. bulgaricus", "strain": "strain=NBRC 13953", "accession": "GCA_006539405.1", "taxid": 1585, "species_taxid": 1584, "relation_to_type": "type", "validated": true, "ani": 81.7757, "matched_fragments": 218, "total_fragments": 321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus delbrueckii subsp. bulgaricus", "strain": "strain=ATCC 11842", "accession": "GCA_000056065.1", "taxid": 1585, "species_taxid": 1584, "relation_to_type": "type", "validated": true, "ani": 81.7552, "matched_fragments": 225, "total_fragments": 321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus corticis", "strain": "strain=B40", "accession": "GCA_018327645.1", "taxid": 2201249, "species_taxid": 2201249, "relation_to_type": "type", "validated": true, "ani": 77.6792, "matched_fragments": 62, "total_fragments": 321, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 67.36, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001434815.1", "gtdb_species": "s__Lactobacillus equicursoris", "ani": 98.068, "matched_fragments": 292, "total_fragments": 321, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.84", "min_intra_species_ani": "97.67", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_001433875.1", "gtdb_species": "s__Lactobacillus delbrueckii", "ani": 81.8758, "matched_fragments": 226, "total_fragments": 321, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.56", "min_intra_species_ani": "96.59", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 103, "status": "-" }, { "accession": "GCA_004556255.1", "gtdb_species": "s__Lactobacillus delbrueckii_B", "ani": 81.4881, "matched_fragments": 199, "total_fragments": 321, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016587775.1", "gtdb_species": "s__Lactobacillus nasalidis", "ani": 81.387, "matched_fragments": 191, "total_fragments": 321, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009695985.1", "gtdb_species": "s__Lactobacillus porci", "ani": 81.2054, "matched_fragments": 227, "total_fragments": 321, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.72", "min_intra_species_ani": "97.20", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_018327645.1", "gtdb_species": "s__Lactobacillus corticis", "ani": 77.6679, "matched_fragments": 63, "total_fragments": 321, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905214545.1", "gtdb_species": "s__Lactobacillus sp905214545", "ani": 77.1929, "matched_fragments": 65, "total_fragments": 321, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.205, "cell_length": 1.176, "doubling_h": -0.086, "growth_tmp": 37.0, "optimum_tmp": 35.0, "optimum_ph": 6.027, "genome_size": 2138635.75, "gc_content": 40.393, "coding_genes": 2119.007, "rRNA16S_genes": 5.074, "tRNA_genes": 63.614, "gram_stain": 1.0, "sporulation": 0.009, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.977, "thermophilic_range_tmp": 0.022, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Lactobacillales", "f__Lactobacillaceae", "g__Lactobacillus", "s__Lactobacillus equicursoris" ], "_genome_taxon": [ "Lactobacillus", "equicursoris", "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Lactobacillales", "f__Lactobacillaceae", "g__Lactobacillus", "s__Lactobacillus equicursoris", "Bacteria", "Bacillota", "Bacilli", "Lactobacillales", "Lactobacillaceae", "Lactobacillus", "Lactobacillus", "equicursoris" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }