{
    "type": "genome",
    "identifier": "GCA_945860115.1",
    "organism": "Asaia bogorensis",
    "title": "Asaia bogorensis",
    "description": "derived from metagenome; genome length too large",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945860115.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110379435",
        "wgs_master": "CAMASC000000000.1",
        "refseq_category": "na",
        "taxid": "91915",
        "species_taxid": "91915",
        "organism_name": "Asaia bogorensis",
        "infraspecific_name": "",
        "isolate": "LH-02apr19-105",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/09",
        "asm_name": "LH-02apr19-105",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/860/115/GCA_945860115.1_LH-02apr19-105",
        "excluded_from_refseq": "derived from metagenome; genome length too large",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-09",
    "dateModified": "2022-09-09",
    "datePublished": "2022-09-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Asaia bogorensis"
        ],
        "sample_taxid": [
            "91915"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy"
        ],
        "sample_host_location_id": [],
        "data_size": "1.281 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 59.03,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4678678",
        "Number of Sequences": "628",
        "Longest Sequences (bp)": "37797",
        "N50 (bp)": "8514",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.8",
        "Number of CDSs": "3990",
        "Average Protein Length": "302.2",
        "Coding Ratio (%)": "77.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "species_taxid": 2602016,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_000299935.1",
                "taxid": 526216,
                "species_taxid": 526216,
                "relation_to_type": "type",
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                "ani": 77.1199,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Oceanibaculum nanhaiense",
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                "accession": "GCA_002148795.1",
                "taxid": 1909734,
                "species_taxid": 1909734,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 241,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hypericibacter terrae",
                "strain": "strain=R5913",
                "accession": "GCA_008728855.1",
                "taxid": 2602015,
                "species_taxid": 2602015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9418,
                "matched_fragments": 315,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenibaculum pallidiluteum",
                "strain": "strain=SYSU D00532",
                "accession": "GCA_017355985.1",
                "taxid": 2812559,
                "species_taxid": 2812559,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8379,
                "matched_fragments": 265,
                "total_fragments": 1285,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum melinis",
                "strain": "strain=TMCY 0552",
                "accession": "GCA_017876055.1",
                "taxid": 328839,
                "species_taxid": 328839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7316,
                "matched_fragments": 307,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vineibacter terrae",
                "strain": "strain=CC-CFT640",
                "accession": "GCA_008039615.1",
                "taxid": 2586908,
                "species_taxid": 2586908,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7001,
                "matched_fragments": 371,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nisaea acidiphila",
                "strain": "strain=MEBiC11861",
                "accession": "GCA_024662015.1",
                "taxid": 1862145,
                "species_taxid": 1862145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6812,
                "matched_fragments": 197,
                "total_fragments": 1285,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium terricola",
                "strain": "strain=17Sr1-39",
                "accession": "GCA_006151805.1",
                "taxid": 2583531,
                "species_taxid": 2583531,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.267,
                "matched_fragments": 289,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas haemaphysalidis",
                "strain": "strain=546",
                "accession": "GCA_017355405.1",
                "taxid": 2768162,
                "species_taxid": 2768162,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2094,
                "matched_fragments": 215,
                "total_fragments": 1285,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCA_009694025.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__SHVZ01;f__SHVZ01;g__SHVZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_016792585.1",
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                "matched_fragments": 902,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__SHVZ01;f__SHVZ01;g__SHVZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_016869375.1",
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                "matched_fragments": 871,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__SHVZ01;f__SHVZ01;g__SHVZ01",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_016869285.1",
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                "num_clustered_genomes": 1,
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            {
                "accession": "GCF_900177295.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__DSM-21159;g__Tistlia",
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            },
            {
                "accession": "GCF_000299935.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Oceanibaculales;f__Oceanibaculaceae;g__Oceanibaculum",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": -0.097,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": null,
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        "gc_content": 59.8,
        "coding_genes": 2718.333,
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        "sporulation": null,
        "motility": 1.0,
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        "facultative_respiration": 0.0,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
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        "f__SHVZ01",
        "g__SHVZ01",
        "s__SHVZ01 sp945871425"
    ],
    "_genome_taxon": [
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        "bogorensis",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
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        "g__SHVZ01",
        "s__SHVZ01 sp945871425",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "SHVZ01",
        "SHVZ01",
        "SHVZ01",
        "SHVZ01",
        "sp945871425"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}