{
    "type": "genome",
    "identifier": "GCA_945860345.1",
    "organism": "Bifidobacterium breve",
    "title": "Bifidobacterium breve",
    "description": "derived from metagenome; genome length too large",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945860345.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110379424",
        "wgs_master": "CAMASA000000000.1",
        "refseq_category": "na",
        "taxid": "1685",
        "species_taxid": "1685",
        "organism_name": "Bifidobacterium breve",
        "infraspecific_name": "",
        "isolate": "LE-05nov19-230",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/09",
        "asm_name": "LE-05nov19-230",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/860/345/GCA_945860345.1_LE-05nov19-230",
        "excluded_from_refseq": "derived from metagenome; genome length too large",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-09",
    "dateModified": "2022-09-09",
    "datePublished": "2022-09-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium breve"
        ],
        "sample_taxid": [
            "1685"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy"
        ],
        "sample_host_location_id": [],
        "data_size": "0.809 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2910167",
        "Number of Sequences": "253",
        "Longest Sequences (bp)": "70397",
        "N50 (bp)": "15874",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.3",
        "Number of CDSs": "2531",
        "Average Protein Length": "320.6",
        "Coding Ratio (%)": "83.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mycolicibacterium anyangense",
                "strain": "strain=JCM 30275",
                "accession": "GCA_010731855.1",
                "taxid": 1431246,
                "species_taxid": 1431246,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1736,
                "matched_fragments": 539,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium rhodesiae",
                "strain": "strain=DSM 44223",
                "accession": "GCA_002086695.1",
                "taxid": 36814,
                "species_taxid": 36814,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9374,
                "matched_fragments": 490,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium pallens",
                "strain": "strain=JCM 16370",
                "accession": "GCA_019456675.1",
                "taxid": 370524,
                "species_taxid": 370524,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9202,
                "matched_fragments": 482,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium crocinum",
                "strain": "strain=JCM 16369",
                "accession": "GCA_022370635.3",
                "taxid": 388459,
                "species_taxid": 388459,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8526,
                "matched_fragments": 483,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium aromaticivorans",
                "strain": "strain=JS19b1",
                "accession": "GCA_000559085.2",
                "taxid": 318425,
                "species_taxid": 318425,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8459,
                "matched_fragments": 478,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium fallax",
                "strain": "strain=DSM 44179",
                "accession": "GCA_002101995.1",
                "taxid": 1793,
                "species_taxid": 1793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8279,
                "matched_fragments": 396,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium vinylchloridicum",
                "strain": "strain=CECT 8761",
                "accession": "GCA_013404075.1",
                "taxid": 2736928,
                "species_taxid": 2736928,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7875,
                "matched_fragments": 500,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium fallax",
                "strain": "strain=JCM 6405",
                "accession": "GCA_010726955.1",
                "taxid": 1793,
                "species_taxid": 1793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7622,
                "matched_fragments": 401,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium brumae",
                "strain": "strain=ATCC 51384",
                "accession": "GCA_025215495.1",
                "taxid": 85968,
                "species_taxid": 85968,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7209,
                "matched_fragments": 355,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium palauense",
                "strain": "strain=CECT 8779",
                "accession": "GCA_002592005.1",
                "taxid": 2034511,
                "species_taxid": 2034511,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6779,
                "matched_fragments": 447,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium brumae",
                "strain": "strain=DSM 44177",
                "accession": "GCA_004014795.1",
                "taxid": 85968,
                "species_taxid": 85968,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6569,
                "matched_fragments": 356,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium sphagni",
                "strain": "strain=ATCC 33027",
                "accession": "GCA_002250655.1",
                "taxid": 1786,
                "species_taxid": 1786,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5965,
                "matched_fragments": 475,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium chubuense",
                "strain": "strain=DSM 44219",
                "accession": "GCA_002086595.1",
                "taxid": 1800,
                "species_taxid": 1800,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5643,
                "matched_fragments": 410,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium chubuense",
                "strain": "strain=NCTC10819",
                "accession": "GCA_900453455.1",
                "taxid": 1800,
                "species_taxid": 1800,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5075,
                "matched_fragments": 420,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium tokaiense",
                "strain": "strain=JCM 6373",
                "accession": "GCA_010725885.1",
                "taxid": 39695,
                "species_taxid": 39695,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.3559,
                "matched_fragments": 405,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium tokaiense",
                "strain": "strain=NCTC10821",
                "accession": "GCA_900453365.1",
                "taxid": 39695,
                "species_taxid": 39695,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.3209,
                "matched_fragments": 409,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium insubricum",
                "strain": "strain=JCM 16366",
                "accession": "GCA_010731615.1",
                "taxid": 444597,
                "species_taxid": 444597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3059,
                "matched_fragments": 403,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium lacusdiani",
                "strain": "strain=JXJ CY 35",
                "accession": "GCA_021916785.1",
                "taxid": 2895283,
                "species_taxid": 2895283,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1675,
                "matched_fragments": 371,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium colombiense",
                "strain": "strain=CECT 3035",
                "accession": "GCA_002105755.1",
                "taxid": 339268,
                "species_taxid": 339268,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.1455,
                "matched_fragments": 367,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium colombiense",
                "strain": "strain=CECT 3035",
                "accession": "GCA_000222105.4",
                "taxid": 339268,
                "species_taxid": 339268,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.1445,
                "matched_fragments": 374,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium neoaurum",
                "strain": "strain=ATCC 25795",
                "accession": "GCA_000691525.1",
                "taxid": 1795,
                "species_taxid": 1795,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0344,
                "matched_fragments": 352,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium neoaurum",
                "strain": "strain=DSM 44074",
                "accession": "GCA_005670605.1",
                "taxid": 1795,
                "species_taxid": 1795,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.981,
                "matched_fragments": 363,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium arabiense",
                "strain": "strain=JCM 18538",
                "accession": "GCA_010731815.2",
                "taxid": 1286181,
                "species_taxid": 1286181,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9437,
                "matched_fragments": 401,
                "total_fragments": 855,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903911165.1",
                "gtdb_species": "s__Mycobacterium sp903911165",
                "ani": 98.8152,
                "matched_fragments": 655,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_005789055.1",
                "gtdb_species": "s__Mycobacterium sp005789055",
                "ani": 90.4683,
                "matched_fragments": 431,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018401645.1",
                "gtdb_species": "s__Mycobacterium sp018401645",
                "ani": 82.8127,
                "matched_fragments": 592,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016462945.1",
                "gtdb_species": "s__Mycobacterium sp016462945",
                "ani": 82.1441,
                "matched_fragments": 612,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903862565.1",
                "gtdb_species": "s__Mycobacterium sp903862565",
                "ani": 80.3319,
                "matched_fragments": 481,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017853185.1",
                "gtdb_species": "s__Mycobacterium sp017853185",
                "ani": 80.0701,
                "matched_fragments": 512,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903884065.1",
                "gtdb_species": "s__Mycobacterium sp903884065",
                "ani": 79.864,
                "matched_fragments": 569,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.70",
                "min_intra_species_ani": "99.70",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001510415.1",
                "gtdb_species": "s__Mycobacterium sp001510415",
                "ani": 79.7767,
                "matched_fragments": 312,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903877095.1",
                "gtdb_species": "s__Mycobacterium sp903877095",
                "ani": 79.5663,
                "matched_fragments": 531,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_005787665.1",
                "gtdb_species": "s__Mycobacterium sp005787665",
                "ani": 79.4805,
                "matched_fragments": 418,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010731855.1",
                "gtdb_species": "s__Mycobacterium anyangense",
                "ani": 79.1476,
                "matched_fragments": 542,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018882965.1",
                "gtdb_species": "s__Mycobacterium sp018882965",
                "ani": 79.115,
                "matched_fragments": 494,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002007745.1",
                "gtdb_species": "s__Mycobacterium litorale_A",
                "ani": 79.0231,
                "matched_fragments": 513,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018882545.1",
                "gtdb_species": "s__Mycobacterium sp018882545",
                "ani": 79.0084,
                "matched_fragments": 302,
                "total_fragments": 855,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.022,
        "cell_length": 0.328,
        "doubling_h": 0.178,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.377,
        "genome_size": 2374244.56,
        "gc_content": 58.777,
        "coding_genes": 1891.625,
        "rRNA16S_genes": 2.385,
        "tRNA_genes": 54.231,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Mycobacteriales",
        "f__Mycobacteriaceae",
        "g__Mycobacterium",
        "s__Mycobacterium sp903911165"
    ],
    "_genome_taxon": [
        "Bifidobacterium",
        "breve",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Mycobacteriales",
        "f__Mycobacteriaceae",
        "g__Mycobacterium",
        "s__Mycobacterium sp903911165",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Mycobacteriales",
        "Mycobacteriaceae",
        "Mycobacterium",
        "Mycobacterium",
        "sp903911165"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}