{
    "type": "genome",
    "identifier": "GCA_945860435.1",
    "organism": "Methylomagnum ishizawai",
    "title": "Methylomagnum ishizawai",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945860435.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110379371",
        "wgs_master": "CAMAQK000000000.1",
        "refseq_category": "na",
        "taxid": "1760988",
        "species_taxid": "1760988",
        "organism_name": "Methylomagnum ishizawai",
        "infraspecific_name": "",
        "isolate": "GE-07nov19-273",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/09",
        "asm_name": "GE-07nov19-273",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/860/435/GCA_945860435.1_GE-07nov19-273",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-09",
    "dateModified": "2022-09-09",
    "datePublished": "2022-09-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylomagnum ishizawai"
        ],
        "sample_taxid": [
            "1760988"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Austria"
        ],
        "sample_host_location_id": [],
        "data_size": "0.615 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2157944",
        "Number of Sequences": "180",
        "Longest Sequences (bp)": "96645",
        "N50 (bp)": "15394",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.0",
        "Number of CDSs": "1913",
        "Average Protein Length": "305.3",
        "Coding Ratio (%)": "81.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903953455.1",
                "gtdb_species": "s__UBA10906 sp903953455",
                "ani": 98.9756,
                "matched_fragments": 478,
                "total_fragments": 632,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.68",
                "min_intra_species_ani": "98.30",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.67",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903848905.1",
                "gtdb_species": "s__UBA10906 sp903848905",
                "ani": 94.7662,
                "matched_fragments": 510,
                "total_fragments": 632,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.42",
                "min_intra_species_ani": "99.33",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900299045.1",
                "gtdb_species": "s__UBA10906 sp900299045",
                "ani": 83.6909,
                "matched_fragments": 424,
                "total_fragments": 632,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003542275.1",
                "gtdb_species": "s__UBA10906 sp003542275",
                "ani": 79.4966,
                "matched_fragments": 209,
                "total_fragments": 632,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903834465.1",
                "gtdb_species": "s__UBA10906 sp903834465",
                "ani": 78.2605,
                "matched_fragments": 209,
                "total_fragments": 632,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903867225.1",
                "gtdb_species": "s__UBA10906 sp903867225",
                "ani": 77.7893,
                "matched_fragments": 182,
                "total_fragments": 632,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_903870545.1",
                "gtdb_species": "s__UBA10906 sp903870545",
                "ani": 77.6487,
                "matched_fragments": 181,
                "total_fragments": 632,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.78",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_903848935.1",
                "gtdb_species": "s__UBA10906 sp903848935",
                "ani": 77.6048,
                "matched_fragments": 178,
                "total_fragments": 632,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_903877065.1",
                "gtdb_species": "s__UBA10906 sp903877065",
                "ani": 77.5751,
                "matched_fragments": 164,
                "total_fragments": 632,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903876445.1",
                "gtdb_species": "s__UBA10906 sp903876445",
                "ani": 77.4545,
                "matched_fragments": 185,
                "total_fragments": 632,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 5480099.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylomonadaceae",
        "g__UBA10906",
        "s__UBA10906 sp903953455"
    ],
    "_genome_taxon": [
        "Methylomagnum",
        "ishizawai",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylomonadaceae",
        "g__UBA10906",
        "s__UBA10906 sp903953455",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Methylococcales",
        "Methylomonadaceae",
        "UBA10906",
        "UBA10906",
        "sp903953455"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}