{ "type": "genome", "identifier": "GCA_945860765.1", "organism": "Pedobacter schmidteae", "title": "Pedobacter schmidteae", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945860765.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110379357", "wgs_master": "CAMATK000000000.1", "refseq_category": "na", "taxid": "2201271", "species_taxid": "2201271", "organism_name": "Pedobacter schmidteae", "infraspecific_name": "", "isolate": "GE-03apr19-272", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/09", "asm_name": "GE-03apr19-272", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/860/765/GCA_945860765.1_GE-03apr19-272", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-09", "dateModified": "2022-09-09", "datePublished": "2022-09-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Pedobacter schmidteae" ], "sample_taxid": [ "2201271" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria" ], "sample_host_location_id": [], "data_size": "0.803 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2820546", "Number of Sequences": "286", "Longest Sequences (bp)": "63353", "N50 (bp)": "12735", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.3", "Number of CDSs": "2108", "Average Protein Length": "343.3", "Coding Ratio (%)": "77.0", "Number of rRNAs": "1", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Daejeonella rubra", "strain": "strain=DSM 24536", "accession": "GCA_900103545.1", "taxid": 990371, "species_taxid": 990371, "relation_to_type": "type", "validated": true, "ani": 83.6816, "matched_fragments": 636, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter soli", "strain": "strain=R14", "accession": "GCA_010692725.1", "taxid": 2705549, "species_taxid": 2705549, "relation_to_type": "type", "validated": true, "ani": 77.7176, "matched_fragments": 50, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Daejeonella lutea", "strain": "strain=DSM 22385", "accession": "GCA_900168015.1", "taxid": 572036, "species_taxid": 572036, "relation_to_type": "type", "validated": true, "ani": 77.6292, "matched_fragments": 128, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Daejeonella oryzae", "strain": "strain=DSM 19973", "accession": "GCA_000422945.1", "taxid": 1122943, "species_taxid": 1122943, "relation_to_type": "type", "validated": true, "ani": 76.7482, "matched_fragments": 98, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter mucosus", "strain": "strain=Q8-18", "accession": "GCA_022200785.1", "taxid": 2895286, "species_taxid": 2895286, "relation_to_type": "type", "validated": true, "ani": 76.4136, "matched_fragments": 53, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter nototheniae", "strain": "strain=36B243", "accession": "GCA_004335085.1", "taxid": 2488994, "species_taxid": 2488994, "relation_to_type": "type", "validated": true, "ani": 76.2706, "matched_fragments": 55, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter alluvionis", "strain": "strain=DSM 19624", "accession": "GCA_003664035.1", "taxid": 475253, "species_taxid": 475253, "relation_to_type": "type", "validated": true, "ani": 76.1367, "matched_fragments": 57, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter alluvionis", "strain": "strain=DSM 19624", "accession": "GCA_004402005.1", "taxid": 475253, "species_taxid": 475253, "relation_to_type": "type", "validated": true, "ani": 76.1074, "matched_fragments": 58, "total_fragments": 806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter cryophilus", "strain": "strain=AR-3-17", "accession": "GCA_005116455.1", "taxid": 2571271, 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"gtdb_species": "s__Pelobium sp005116455", "ani": 76.1091, "matched_fragments": 63, "total_fragments": 806, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pelobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.28, "cell_length": 0.284, "doubling_h": null, "growth_tmp": 24.703, "optimum_tmp": 25.616, "optimum_ph": 7.026, "genome_size": 5519163.389, "gc_content": 42.651, "coding_genes": 4725.333, "rRNA16S_genes": 4.333, "tRNA_genes": 57.25, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.281, "range_salinity": null, "facultative_respiration": 0.031, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.968, "mesophilic_range_tmp": 0.5, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.5, 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