{ "type": "genome", "identifier": "GCA_945861925.1", "organism": "Bifidobacterium breve", "title": "Bifidobacterium breve", "description": "derived from metagenome; genome length too large", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945861925.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110379606", "wgs_master": "CAMAWO000000000.1", "refseq_category": "na", "taxid": "1685", "species_taxid": "1685", "organism_name": "Bifidobacterium breve", "infraspecific_name": "", "isolate": "MaH-09apr19-236", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/09", "asm_name": "MaH-09apr19-236", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/861/925/GCA_945861925.1_MaH-09apr19-236", "excluded_from_refseq": "derived from metagenome; genome length too large", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-09", "dateModified": "2022-09-09", "datePublished": "2022-09-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium breve" ], "sample_taxid": [ "1685" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "1.032 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 74.31, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { 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95, "status": "below_threshold" }, { "organism_name": "Knoellia aerolata", "strain": "strain=DSM 18566", "accession": "GCA_000768695.1", "taxid": 442954, "species_taxid": 442954, "relation_to_type": "type", "validated": true, "ani": 76.1913, "matched_fragments": 73, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_004025845.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 76.1122, "matched_fragments": 84, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 76.0688, "matched_fragments": 85, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermodiastaticus", "strain": "strain=DSM 40573", "accession": "GCA_021394575.1", "taxid": 44061, "species_taxid": 44061, "relation_to_type": "type", "validated": true, "ani": 76.0614, "matched_fragments": 84, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella rhizosphaerae", "strain": "strain=NEAU-YY265", "accession": "GCA_003579925.1", "taxid": 2293569, "species_taxid": 2293569, "relation_to_type": "type", "validated": true, "ani": 76.0549, "matched_fragments": 103, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_000297495.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 76.0474, "matched_fragments": 83, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intrasporangium chromatireducens", "strain": "strain=Q5-1", "accession": "GCA_000576575.1", "taxid": 1386088, "species_taxid": 1386088, "relation_to_type": "type", "validated": true, "ani": 75.9968, "matched_fragments": 79, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=DSM 45079", "accession": "GCA_900105925.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 75.9929, "matched_fragments": 107, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia subterranea", "strain": "strain=KCTC 19937", "accession": "GCA_000768685.1", "taxid": 184882, "species_taxid": 184882, "relation_to_type": "type", "validated": true, "ani": 75.9679, "matched_fragments": 79, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella muralis", "strain": "strain=DSM 45357", "accession": "GCA_001270745.1", "taxid": 702383, "species_taxid": 702383, "relation_to_type": "type", "validated": true, "ani": 75.951, "matched_fragments": 104, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albireticuli", "strain": "strain=NRRL B1670", "accession": "GCA_021228125.1", "taxid": 1940, "species_taxid": 1940, "relation_to_type": "type", "validated": true, "ani": 75.9196, "matched_fragments": 103, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=DSM 45237", "accession": "GCA_900106035.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 75.9124, "matched_fragments": 119, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=YIM 61503", "accession": "GCA_001708125.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 75.9012, "matched_fragments": 120, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 75.703, "matched_fragments": 58, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cnuibacter physcomitrellae", "strain": "strain=CGMCC 1.15041", "accession": "GCA_014640535.1", "taxid": 1619308, "species_taxid": 1619308, "relation_to_type": "type", "validated": true, "ani": 75.6642, "matched_fragments": 60, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubrisoli", "strain": "strain=DSM 42083", "accession": "GCA_024436055.1", "taxid": 1387313, "species_taxid": 1387313, "relation_to_type": "type", "validated": true, "ani": 75.6246, "matched_fragments": 78, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinophytocola algeriensis", "strain": "strain=DSM 46746", "accession": "GCA_014874055.1", "taxid": 1768010, "species_taxid": 1768010, "relation_to_type": "type", "validated": true, "ani": 75.6243, "matched_fragments": 78, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces hippuratus", "strain": "strain=DSM 8598", "accession": "GCA_013410355.1", "taxid": 286438, "species_taxid": 286438, "relation_to_type": "type", "validated": true, "ani": 75.6097, "matched_fragments": 69, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces flavus", "strain": "strain=CCM 7623", "accession": "GCA_014635805.1", "taxid": 589382, "species_taxid": 589382, "relation_to_type": "type", "validated": true, "ani": 75.6082, "matched_fragments": 51, "total_fragments": 1069, 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"organism_name": "Amycolatopsis xylanica", "strain": "strain=CPCC 202699", "accession": "GCA_900107045.1", "taxid": 589385, "species_taxid": 589385, "relation_to_type": "type", "validated": true, "ani": 75.509, "matched_fragments": 85, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella glacieicola", "strain": "strain=T3246-1", "accession": "GCA_004353825.1", "taxid": 2518684, "species_taxid": 2518684, "relation_to_type": "type", "validated": true, "ani": 75.495, "matched_fragments": 61, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia lijiangensis", "strain": "strain=NBRC 108240", "accession": "GCA_001613045.1", "taxid": 299618, "species_taxid": 299618, "relation_to_type": "type", "validated": true, "ani": 75.4405, "matched_fragments": 67, "total_fragments": 1069, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 74.31, "contamination": 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