{ "type": "genome", "identifier": "GCA_945871255.1", "organism": "Bifidobacterium breve", "title": "Bifidobacterium breve", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945871255.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110380152", "wgs_master": "CAMBVK000000000.1", "refseq_category": "na", "taxid": "1685", "species_taxid": "1685", "organism_name": "Bifidobacterium breve", "infraspecific_name": "", "isolate": "MsE-30apr19-112", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "MsE-30apr19-112", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/871/255/GCA_945871255.1_MsE-30apr19-112", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium breve" ], "sample_taxid": [ "1685" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.774 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length 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78.4762, "matched_fragments": 405, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium insubricum", "strain": "strain=JCM 16366", "accession": "GCA_010731615.1", "taxid": 444597, "species_taxid": 444597, "relation_to_type": "type", "validated": true, "ani": 78.4581, "matched_fragments": 408, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium thermoresistibile", "strain": "strain=JCM6362", "accession": "GCA_001570505.1", "taxid": 1797, "species_taxid": 1797, "relation_to_type": "type", "validated": true, "ani": 78.4476, "matched_fragments": 397, "total_fragments": 839, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium tokaiense", "strain": "strain=JCM 6373", "accession": "GCA_010725885.1", "taxid": 39695, "species_taxid": 39695, "relation_to_type": "suspected-type", "validated": true, "ani": 78.397, "matched_fragments": 403, 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