{ "type": "genome", "identifier": "GCA_945871445.1", "organism": "Singulisphaera sp. GP187", "title": "Singulisphaera sp. GP187", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945871445.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110380494", "wgs_master": "CAMBWI000000000.1", "refseq_category": "na", "taxid": "1882752", "species_taxid": "1882752", "organism_name": "Singulisphaera sp. GP187", "infraspecific_name": "", "isolate": "TrH-03may19-212", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "TrH-03may19-212", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/871/445/GCA_945871445.1_TrH-03may19-212", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Singulisphaera sp. GP187" ], "sample_taxid": [ "1882752" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria" ], "sample_host_location_id": [], "data_size": "0.641 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.69, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2258487", "Number of Sequences": "96", "Longest Sequences (bp)": "96922", "N50 (bp)": "37414", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.5", "Number of CDSs": "1829", "Average Protein Length": "358.7", "Coding Ratio (%)": "87.1", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 95.69, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_005792145.1", "gtdb_species": "s__F1-60-MAGs104 sp005792145", "ani": 83.7078, "matched_fragments": 563, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__F1-60-MAGs104", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.55", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_903961015.1", "gtdb_species": "s__F1-60-MAGs104 sp903961015", "ani": 83.4775, "matched_fragments": 530, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__F1-60-MAGs104", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "98.85", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCA_903919715.1", "gtdb_species": "s__F1-60-MAGs104 sp903919715", "ani": 79.2301, "matched_fragments": 390, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__F1-60-MAGs104", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_009691705.1", "gtdb_species": "s__F1-60-MAGs104 sp009691705", "ani": 77.1284, "matched_fragments": 89, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__F1-60-MAGs104", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009691725.1", "gtdb_species": "s__F1-60-MAGs104 sp009691725", "ani": 76.883, "matched_fragments": 89, "total_fragments": 709, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__F1-60-MAGs104", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.288, "cell_length": 0.288, "doubling_h": null, "growth_tmp": 27.0, "optimum_tmp": 23.0, "optimum_ph": 5.25, "genome_size": 9755687.0, "gc_content": 62.267, "coding_genes": 7330.333, "rRNA16S_genes": 8.0, "tRNA_genes": 64.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Planctomycetota", "c__Phycisphaerae", "o__Phycisphaerales", "f__SM1A02", "g__F1-60-MAGs104", "s__F1-60-MAGs104 sp945871445" ], "_genome_taxon": [ "Singulisphaera", "sp.", "GP187", "d__Bacteria", "p__Planctomycetota", "c__Phycisphaerae", "o__Phycisphaerales", "f__SM1A02", "g__F1-60-MAGs104", "s__F1-60-MAGs104 sp945871445", "Bacteria", "Planctomycetota", "Phycisphaerae", "Phycisphaerales", "SM1A02", "F1-60-MAGs104", "F1-60-MAGs104", "sp945871445" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }