{ "type": "genome", "identifier": "GCA_945871685.1", "organism": "Veillonella caviae", "title": "Veillonella caviae", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945871685.1", "bioproject": "PRJEB52676", "biosample": "SAMEA110402236", "wgs_master": "CAMBWR000000000.1", "refseq_category": "na", "taxid": "248316", "species_taxid": "248316", "organism_name": "Veillonella caviae", "infraspecific_name": "", "isolate": "ERR1855552_bin.1_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "ERR1855552_bin.1_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "GCF_945871685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/871/685/GCA_945871685.1_ERR1855552_bin.1_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Veillonella caviae" ], "sample_taxid": [ "248316" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.533 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1865046", "Number of Sequences": "54", "Longest Sequences (bp)": "130337", "N50 (bp)": "76703", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.4", "Number of CDSs": "1706", "Average Protein Length": "315.7", "Coding Ratio (%)": "86.6", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Veillonella caviae", "strain": "strain=DSM 20738", "accession": "GCA_003992125.1", "taxid": 248316, "species_taxid": 248316, "relation_to_type": "type", "validated": true, "ani": 98.3872, "matched_fragments": 541, "total_fragments": 597, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Veillonella atypica", "strain": "strain=ATCC 17744", "accession": "GCA_002959915.1", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 81.3483, "matched_fragments": 333, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella atypica", "strain": "strain=NCTC11830", "accession": "GCA_900460235.1", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 81.3368, "matched_fragments": 330, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella atypica", "strain": "strain=KON", "accession": "GCA_000318355.2", "taxid": 39777, "species_taxid": 39777, "relation_to_type": "type", "validated": true, "ani": 81.286, "matched_fragments": 320, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella tobetsuensis", "strain": "strain=ATCC BAA-2400", "accession": "GCA_001078375.1", "taxid": 1110546, "species_taxid": 1110546, "relation_to_type": "type", "validated": true, "ani": 81.0677, "matched_fragments": 337, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Veillonella nakazawae", "strain": "strain=T1-7", "accession": "GCA_013393365.1", "taxid": 2682456, "species_taxid": 2682456, "relation_to_type": 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