{ "type": "genome", "identifier": "GCA_945873015.1", "organism": "Klebsiella pneumoniae", "title": "Klebsiella pneumoniae", "description": "unverified source organism; derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945873015.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110380577", "wgs_master": "CAMCBY000000000.1", "refseq_category": "na", "taxid": "573", "species_taxid": "573", "organism_name": "Klebsiella pneumoniae", "infraspecific_name": "", "isolate": "ZE-13nov19-135", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "ZE-13nov19-135", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/873/015/GCA_945873015.1_ZE-13nov19-135", "excluded_from_refseq": "unverified source organism; derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Klebsiella pneumoniae" ], "sample_taxid": [ "573" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "1.146 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 84.95, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4071246", "Number of Sequences": "531", "Longest Sequences (bp)": "44938", "N50 (bp)": "8602", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.8", "Number of CDSs": "3304", "Average Protein Length": "314.4", "Coding Ratio (%)": "76.5", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas psychrotolerans", "strain": "strain=DSM 15758", "accession": "GCA_900102665.1", "taxid": 237610, "species_taxid": 237610, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0008, "matched_fragments": 64, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pavanii", "strain": "strain=LMG 25348", "accession": "GCA_900101175.1", "taxid": 487698, "species_taxid": 487698, "relation_to_type": "type", "validated": true, "ani": 75.9893, "matched_fragments": 57, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzihabitans", "strain": "strain=DSM 6835", "accession": "GCA_012986195.1", "taxid": 47885, "species_taxid": 47885, "relation_to_type": "suspected-type", "validated": true, "ani": 75.9827, "matched_fragments": 63, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas nitritireducens", "strain": "strain=DSM 12575", "accession": "GCA_001431425.1", "taxid": 83617, "species_taxid": 83617, "relation_to_type": "type", "validated": true, "ani": 75.9431, "matched_fragments": 66, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas pavanii", "strain": "strain=DSM 25135", "accession": "GCA_001431565.1", "taxid": 487698, "species_taxid": 487698, "relation_to_type": "type", "validated": true, "ani": 75.8976, "matched_fragments": 62, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans acidivorans", "strain": "strain=DSM 23606", "accession": "GCA_003182095.1", "taxid": 886464, "species_taxid": 886464, "relation_to_type": "type", "validated": true, "ani": 75.8891, "matched_fragments": 91, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocystis violacea", "strain": "strain=DSM 207", "accession": "GCA_016583575.1", "taxid": 13725, "species_taxid": 13725, "relation_to_type": "type", "validated": true, "ani": 75.7544, "matched_fragments": 56, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arenosi", "strain": "strain=R7", "accession": "GCA_016613475.2", "taxid": 2795387, "species_taxid": 2795387, "relation_to_type": "type", "validated": true, "ani": 75.7355, "matched_fragments": 67, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella choica", "strain": "strain=4 M-K27", "accession": "GCA_003977665.1", "taxid": 1927959, "species_taxid": 1927959, "relation_to_type": "type", "validated": true, "ani": 75.7141, "matched_fragments": 51, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oleiagrimonas soli", "strain": "strain=3.5X", "accession": "GCA_000761445.1", "taxid": 1543381, "species_taxid": 1543381, "relation_to_type": "type", "validated": true, "ani": 75.7122, "matched_fragments": 71, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa marina", "strain": "strain=DSM 19078", "accession": "GCA_008632335.1", "taxid": 424902, "species_taxid": 424902, "relation_to_type": "type", "validated": true, "ani": 75.6759, "matched_fragments": 50, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 75.6514, "matched_fragments": 96, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Steroidobacter gossypii", "strain": "strain=S1-65", "accession": "GCA_016801985.1", "taxid": 2805490, "species_taxid": 2805490, "relation_to_type": "type", "validated": true, "ani": 75.6324, "matched_fragments": 72, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloversatilis discipulorum", "strain": "strain=FAM1", "accession": "GCA_000527135.1", "taxid": 1119528, "species_taxid": 1119528, "relation_to_type": "type", "validated": true, "ani": 75.6062, "matched_fragments": 75, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halochromatium glycolicum", "strain": "strain=DSM 11080", "accession": "GCA_016584085.1", "taxid": 85075, "species_taxid": 85075, "relation_to_type": "type", "validated": true, "ani": 75.5993, "matched_fragments": 61, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Immundisolibacter cernigliae", "strain": "strain=TR3.2", "accession": "GCA_001697225.1", "taxid": 1810504, "species_taxid": 1810504, "relation_to_type": "type", "validated": true, "ani": 75.5506, "matched_fragments": 80, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola peritrichatus", "strain": "strain=JCM 18795", "accession": "GCA_003206715.1", "taxid": 1267424, "species_taxid": 1267424, "relation_to_type": "type", "validated": true, "ani": 75.5442, "matched_fragments": 53, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloversatilis universalis", "strain": "strain=FAM5", "accession": "GCA_000214035.3", "taxid": 378211, "species_taxid": 378211, "relation_to_type": "type", "validated": true, "ani": 75.4882, "matched_fragments": 73, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas benzenivorans", "strain": "strain=DSM 8628", "accession": "GCA_900100495.1", "taxid": 556533, "species_taxid": 556533, "relation_to_type": "type", "validated": true, "ani": 75.4665, "matched_fragments": 81, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tahibacter aquaticus", "strain": "strain=DSM 21667", "accession": "GCA_004363655.1", "taxid": 520092, "species_taxid": 520092, "relation_to_type": "type", "validated": true, "ani": 75.4274, "matched_fragments": 73, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudolysobacter antarcticus", "strain": "strain=AQ6-296", "accession": "GCA_004168365.1", "taxid": 2511995, "species_taxid": 2511995, "relation_to_type": "type", "validated": true, "ani": 75.4002, "matched_fragments": 53, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", "validated": true, "ani": 75.3884, "matched_fragments": 52, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurivermis fontis", "strain": "strain=JG42", "accession": "GCA_004001245.1", "taxid": 1972068, "species_taxid": 1972068, "relation_to_type": "type", "validated": true, "ani": 75.3574, "matched_fragments": 80, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluolicum", "strain": "strain=T", "accession": "GCA_012911005.2", "taxid": 90060, "species_taxid": 90060, "relation_to_type": "type", "validated": true, "ani": 75.3507, "matched_fragments": 64, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=JCM 5962", "accession": "GCA_022496575.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 75.2721, "matched_fragments": 71, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus indigens", "strain": "strain=VB32", "accession": "GCA_012910835.1", "taxid": 29545, "species_taxid": 29545, "relation_to_type": "type", "validated": true, "ani": 75.2323, "matched_fragments": 66, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus indigens", "strain": "strain=DSM 12121", "accession": "GCA_004361735.1", "taxid": 29545, "species_taxid": 29545, "relation_to_type": "type", "validated": true, "ani": 75.2204, "matched_fragments": 67, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 75.1994, "matched_fragments": 76, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 84.95, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016719885.1", "gtdb_species": "s__JADJYF01 sp016719885", "ani": 81.8747, "matched_fragments": 820, "total_fragments": 1116, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ga0077536;f__Ga0077536;g__JADJYF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "97.68", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016209015.1", "gtdb_species": "s__JACQWY01 sp016209015", "ani": 76.4997, "matched_fragments": 159, "total_fragments": 1116, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ga0077536;f__Ga0077536;g__JACQWY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016874535.1", "gtdb_species": "s__CAIKBL01 sp016874535", "ani": 76.4687, "matched_fragments": 108, "total_fragments": 1116, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ga0077536;f__Ga0077536;g__CAIKBL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001464935.1", "gtdb_species": "s__Ga0077536 sp001464935", "ani": 76.302, "matched_fragments": 197, "total_fragments": 1116, "gtdb_taxonomy": 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