{ "type": "genome", "identifier": "GCA_945873205.1", "organism": "uncultured bacterium", "title": "uncultured bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945873205.1", "bioproject": "PRJEB53025", "biosample": "SAMEA110403022", "wgs_master": "CAMCCC000000000.1", "refseq_category": "na", "taxid": "77133", "species_taxid": "77133", "organism_name": "uncultured bacterium", "infraspecific_name": "", "isolate": "SRR17382097_bin.28_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/15", "asm_name": "SRR17382097_bin.28_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/873/205/GCA_945873205.1_SRR17382097_bin.28_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-15", "dateModified": "2022-09-15", "datePublished": "2022-09-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured bacterium" ], "sample_taxid": [ "77133" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.626 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 92.47, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2222228", "Number of Sequences": "48", "Longest Sequences (bp)": "264523", "N50 (bp)": "75153", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.3", "Number of CDSs": "2111", "Average Protein Length": "310.9", "Coding Ratio (%)": "88.6", "Number of rRNAs": "1", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavonifractor plautii", "strain": "strain=JCM 32125", "accession": "GCA_010508875.1", "taxid": 292800, "species_taxid": 292800, "relation_to_type": "suspected-type", "validated": true, "ani": 78.1794, "matched_fragments": 142, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavonifractor plautii", "strain": "strain=ATCC 29863", "accession": "GCA_000239295.1", "taxid": 292800, "species_taxid": 292800, "relation_to_type": "suspected-type", "validated": true, "ani": 78.1467, "matched_fragments": 140, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dysosmobacter acutus", "strain": "strain=MSJ-2", "accession": "GCA_018919205.1", "taxid": 2841504, "species_taxid": 2841504, "relation_to_type": "type", "validated": true, "ani": 77.9678, "matched_fragments": 104, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vescimonas fastidiosa", "strain": "strain=MM35", "accession": "GCA_018326305.1", "taxid": 2714353, "species_taxid": 2714353, "relation_to_type": "type", "validated": true, "ani": 77.89, "matched_fragments": 117, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium phoceensis", "strain": "strain=GD3", "accession": "GCA_001244495.1", "taxid": 1650661, "species_taxid": 1650661, "relation_to_type": "type", "validated": true, "ani": 77.8365, "matched_fragments": 129, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoflavonifractor gallinarum", "strain": "strain=DSM 107456", "accession": "GCA_014982855.1", "taxid": 2779352, "species_taxid": 2779352, "relation_to_type": "type", "validated": true, "ani": 77.7745, "matched_fragments": 123, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dysosmobacter welbionis", "strain": "strain=J115", "accession": "GCA_005121165.3", "taxid": 2093857, "species_taxid": 2093857, "relation_to_type": "type", "validated": true, "ani": 77.7361, "matched_fragments": 144, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oscillibacter ruminantium", "strain": "strain=GH1", "accession": "GCA_000307265.1", "taxid": 1263547, "species_taxid": 1263547, "relation_to_type": "type", "validated": true, "ani": 76.7926, "matched_fragments": 77, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Provencibacterium massiliense", "strain": "strain=Marseille-P2780", "accession": "GCA_900169495.1", "taxid": 1841868, "species_taxid": 1841868, "relation_to_type": "type", "validated": true, "ani": 76.7609, "matched_fragments": 54, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=DSM 26588", "accession": "GCA_003096335.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 76.5566, "matched_fragments": 95, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=DSM 26588", "accession": "GCA_024622565.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 76.5396, "matched_fragments": 96, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinimonas butyriciproducens", "strain": "strain=SRB-521-5-I", "accession": "GCA_004154955.1", "taxid": 1297617, "species_taxid": 1297617, "relation_to_type": "type", "validated": true, "ani": 76.5151, "matched_fragments": 95, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporobacter termitidis", "strain": "strain=DSM 10068", "accession": "GCA_900130065.1", "taxid": 44749, "species_taxid": 44749, "relation_to_type": "type", "validated": true, "ani": 76.0422, "matched_fragments": 53, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 92.47, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_004560305.1", "gtdb_species": "s__Limivicinus sp004560305", "ani": 93.0585, "matched_fragments": 414, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.68", "min_intra_species_ani": "96.68", "mean_intra_species_af": "0.69", "min_intra_species_af": "0.69", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018711755.1", "gtdb_species": "s__Limivicinus faecipullorum", "ani": 82.4271, "matched_fragments": 345, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900754515.1", "gtdb_species": "s__Limivicinus sp900754515", "ani": 80.7437, "matched_fragments": 329, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "97.83", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017470325.1", "gtdb_species": "s__Limivicinus sp017470325", "ani": 80.6347, "matched_fragments": 259, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902787755.1", "gtdb_species": "s__Limivicinus sp902787755", "ani": 80.5803, "matched_fragments": 235, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902765595.1", "gtdb_species": "s__Limivicinus sp002350825", "ani": 80.453, "matched_fragments": 262, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.80", "min_intra_species_ani": "99.80", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902778275.1", "gtdb_species": "s__Limivicinus sp902778275", "ani": 80.4494, "matched_fragments": 286, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900319635.1", "gtdb_species": "s__Limivicinus sp900319635", "ani": 80.3565, "matched_fragments": 263, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.84", "min_intra_species_ani": "96.83", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.76", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_902775355.1", "gtdb_species": "s__Limivicinus sp902775355", "ani": 80.3537, "matched_fragments": 291, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017545165.1", "gtdb_species": "s__Limivicinus sp017545165", "ani": 80.2609, "matched_fragments": 221, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017428565.1", "gtdb_species": "s__Limivicinus sp017428565", "ani": 80.2568, "matched_fragments": 284, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900316255.1", "gtdb_species": "s__Limivicinus sp900316255", "ani": 80.199, "matched_fragments": 271, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.92", "min_intra_species_ani": "95.41", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.79", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902775985.1", "gtdb_species": "s__Limivicinus sp902775985", "ani": 79.9905, "matched_fragments": 253, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.45", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.73", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_017458085.1", "gtdb_species": "s__Limivicinus sp017458085", "ani": 79.9768, "matched_fragments": 266, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900319835.1", "gtdb_species": "s__Limivicinus sp900319835", "ani": 79.9649, "matched_fragments": 282, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902793285.1", "gtdb_species": "s__Limivicinus sp902793285", "ani": 79.3128, "matched_fragments": 215, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.34", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902795045.1", "gtdb_species": "s__Limivicinus sp902795045", "ani": 79.2209, "matched_fragments": 241, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.71", "min_intra_species_ani": "97.45", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.77", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902785905.1", "gtdb_species": "s__Limivicinus sp902785905", "ani": 79.1311, "matched_fragments": 220, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900547315.1", "gtdb_species": "s__Limivicinus sp900547315", "ani": 78.7921, "matched_fragments": 168, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900319695.1", "gtdb_species": "s__Limivicinus sp900319695", "ani": 78.7424, "matched_fragments": 223, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.29", "min_intra_species_ani": "96.47", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.81", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_017550765.1", "gtdb_species": "s__Limivicinus sp017550765", "ani": 78.2065, "matched_fragments": 150, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900546515.1", "gtdb_species": "s__Limivicinus sp900546515", "ani": 77.8989, "matched_fragments": 159, "total_fragments": 719, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__Limivicinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Oscillospiraceae", "g__Limivicinus", "s__Limivicinus sp945873205" ], "_genome_taxon": [ "uncultured", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Oscillospiraceae", "g__Limivicinus", "s__Limivicinus sp945873205", "Bacteria", "Bacillota", "A", "Clostridia", "Oscillospirales", "Oscillospiraceae", "Limivicinus", "Limivicinus", "sp945873205" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }