{ "type": "genome", "identifier": "GCA_945873245.1", "organism": "Rhizobium sp. Q54", "title": "Rhizobium sp. Q54", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945873245.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110379551", "wgs_master": "CAMCEF000000000.1", "refseq_category": "na", "taxid": "1335060", "species_taxid": "1335060", "organism_name": "Rhizobium sp. Q54", "infraspecific_name": "", "isolate": "MaH-04nov19-106", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "MaH-04nov19-106", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/873/245/GCA_945873245.1_MaH-04nov19-106", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhizobium sp. Q54" ], "sample_taxid": [ "1335060" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "0.647 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 69.76, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2344411", "Number of Sequences": "417", "Longest Sequences (bp)": "20904", "N50 (bp)": "5973", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.2", "Number of CDSs": "1861", "Average Protein Length": "299.0", "Coding Ratio (%)": "71.2", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dongia mobilis", "strain": "strain=CGMCC 1.7660", "accession": 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"strain=CTAW71", "accession": "GCA_008123425.1", "taxid": 515499, "species_taxid": 515499, "relation_to_type": "type", "validated": true, "ani": 75.6877, "matched_fragments": 80, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia soli", "strain": "strain=DSM 19436", "accession": "GCA_900129325.1", "taxid": 446684, "species_taxid": 446684, "relation_to_type": "type", "validated": true, "ani": 75.6066, "matched_fragments": 50, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes elegans", "strain": "strain=DSM 11907", "accession": "GCA_003258805.1", "taxid": 29408, "species_taxid": 29408, "relation_to_type": "type", "validated": true, "ani": 75.5631, "matched_fragments": 76, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseiarcus fermentans", "strain": "strain=DSM 24875", "accession": "GCA_003315135.1", "taxid": 1473586, 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