{ "tc_result": [ { "organism_name": "Streptococcus ferus", "strain": "strain=NCTC12278", "accession": "GCA_900475025.1", "taxid": 1345, "species_taxid": 1345, "relation_to_type": "type", "validated": true, "ani": 98.3327, "matched_fragments": 533, "total_fragments": 615, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus ferus", "strain": "strain=DSM 20646", "accession": "GCA_000372425.1", "taxid": 1345, "species_taxid": 1345, "relation_to_type": "type", "validated": true, "ani": 98.2875, "matched_fragments": 537, "total_fragments": 615, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus ratti", "strain": "strain=DSM 20564", "accession": "GCA_000347915.1", "taxid": 1341, "species_taxid": 1341, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7158, "matched_fragments": 157, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus orisratti", "strain": "strain=DSM 15617", "accession": "GCA_000380105.1", "taxid": 114652, "species_taxid": 114652, "relation_to_type": "type", "validated": true, "ani": 79.6789, "matched_fragments": 95, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ratti", "strain": "strain=FA-1", "accession": "GCA_000286075.1", "taxid": 1341, "species_taxid": 1341, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6138, "matched_fragments": 174, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 79.5804, "matched_fragments": 88, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus suis", "strain": "strain=S735", "accession": "GCA_000294495.1", "taxid": 1307, "species_taxid": 1307, "relation_to_type": "type", "validated": true, "ani": 78.3681, "matched_fragments": 70, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thermophilus", "strain": "strain=DSM 20617", "accession": "GCA_019972875.1", "taxid": 1308, "species_taxid": 1308, "relation_to_type": "type", "validated": true, "ani": 78.3639, "matched_fragments": 67, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9529, "matched_fragments": 60, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. ruminatorum", "strain": "strain=CECT 5772", "accession": "GCA_000706805.1", "taxid": 254358, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 77.9096, "matched_fragments": 53, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC7863", "accession": "GCA_900475505.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5036, "matched_fragments": 72, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus devriesei", "strain": "strain=DSM 19639", "accession": "GCA_000423725.1", "taxid": 231233, "species_taxid": 231233, "relation_to_type": "type", "validated": true, "ani": 77.364, "matched_fragments": 141, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus catagoni", "strain": "strain=99-1/2017", "accession": "GCA_011421425.1", "taxid": 2654874, "species_taxid": 2654874, "relation_to_type": "type", "validated": true, "ani": 77.3036, "matched_fragments": 59, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC 7863", "accession": "GCA_001593525.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2248, "matched_fragments": 71, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thoraltensis", "strain": "strain=DSM 12221", "accession": "GCA_000380145.1", "taxid": 55085, "species_taxid": 55085, "relation_to_type": "type", "validated": true, "ani": 77.1483, "matched_fragments": 76, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mutans", "strain": "strain=DSM 20523", "accession": "GCA_000375505.1", "taxid": 1309, "species_taxid": 1309, "relation_to_type": "type", "validated": true, "ani": 77.1268, "matched_fragments": 141, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus peroris", "strain": "strain=ATCC 700780", "accession": "GCA_000187585.1", "taxid": 68891, "species_taxid": 68891, "relation_to_type": "type", "validated": true, "ani": 77.0855, "matched_fragments": 56, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 77.0321, "matched_fragments": 60, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 76.8939, "matched_fragments": 60, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 76.8813, "matched_fragments": 55, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus halichoeri", "strain": "strain=CCUG48324", "accession": "GCA_009870755.1", "taxid": 254785, "species_taxid": 254785, "relation_to_type": "type", "validated": true, "ani": 76.3939, "matched_fragments": 58, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus chenjunshii", "strain": "strain=Z15", "accession": "GCA_003086355.2", "taxid": 2173853, "species_taxid": 2173853, "relation_to_type": "type", "validated": true, "ani": 76.3714, "matched_fragments": 79, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pantholopis", "strain": "strain=TA 26", "accession": "GCA_001642085.1", "taxid": 1811193, "species_taxid": 1811193, "relation_to_type": "type", "validated": true, "ani": 76.0448, "matched_fragments": 66, "total_fragments": 615, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000372425.1", "gtdb_species": "s__Streptococcus ferus", "ani": 98.2875, "matched_fragments": 537, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000286075.1", "gtdb_species": "s__Streptococcus ratti", "ani": 79.6435, "matched_fragments": 173, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.59", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_018137985.1", "gtdb_species": "s__Streptococcus sp018137985", "ani": 79.5804, "matched_fragments": 88, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002964575.1", "gtdb_species": "s__Streptococcus suis_R", "ani": 79.2858, "matched_fragments": 78, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002964045.1", "gtdb_species": "s__Streptococcus suis_U", "ani": 79.2603, "matched_fragments": 72, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.50", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000440115.1", "gtdb_species": "s__Streptococcus suis_L", "ani": 79.0635, "matched_fragments": 77, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000186445.1", "gtdb_species": "s__Streptococcus agalactiae", "ani": 78.5551, "matched_fragments": 62, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.63", "num_clustered_genomes": 1516, "status": "-" }, { "accession": "GCF_010120595.1", "gtdb_species": "s__Streptococcus thermophilus", "ani": 78.4581, "matched_fragments": 65, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "97.47", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.81", "num_clustered_genomes": 130, "status": "-" }, { "accession": "GCF_001937065.1", "gtdb_species": "s__Streptococcus sp001937065", "ani": 77.7514, "matched_fragments": 156, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000194945.1", "gtdb_species": "s__Streptococcus sanguinis", "ani": 77.5007, "matched_fragments": 72, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.02", "min_intra_species_ani": "95.01", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 47, "status": "-" }, { "accession": "GCF_000423725.1", "gtdb_species": "s__Streptococcus devriesei", "ani": 77.3847, "matched_fragments": 140, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000963275.1", "gtdb_species": "s__Streptococcus parasanguinis_B", "ani": 77.3763, "matched_fragments": 58, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.2991, "mean_intra_species_ani": "95.64", "min_intra_species_ani": "95.37", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_016908645.1", "gtdb_species": "s__Streptococcus loxodontisalivarius", "ani": 77.3203, "matched_fragments": 77, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013343115.1", "gtdb_species": "s__Streptococcus sanguinis_H", "ani": 77.2399, "matched_fragments": 69, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.75", "min_intra_species_ani": "95.06", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_003337175.1", "gtdb_species": "s__Streptococcus gallolyticus_B", "ani": 77.1527, "matched_fragments": 84, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.6693, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001078705.1", "gtdb_species": "s__Streptococcus sanguinis_D", "ani": 77.1486, "matched_fragments": 59, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000380145.1", "gtdb_species": "s__Streptococcus thoraltensis", "ani": 77.1483, "matched_fragments": 76, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002096855.1", "gtdb_species": "s__Streptococcus mitis_Y", "ani": 77.1349, "matched_fragments": 55, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.03", "min_intra_species_ani": "96.03", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001579665.1", "gtdb_species": "s__Streptococcus mitis_S", "ani": 77.1013, "matched_fragments": 61, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.64", "min_intra_species_ani": "95.33", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000187585.1", "gtdb_species": "s__Streptococcus peroris", "ani": 77.0855, "matched_fragments": 56, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.68", "min_intra_species_ani": "96.68", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003686955.1", "gtdb_species": "s__Streptococcus sp003686955", "ani": 77.0676, "matched_fragments": 69, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015594605.1", "gtdb_species": "s__Streptococcus sp015594605", "ani": 76.9567, "matched_fragments": 87, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905221295.1", "gtdb_species": "s__Streptococcus sp905221295", "ani": 76.8881, "matched_fragments": 56, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011038795.1", "gtdb_species": "s__Streptococcus sp011038795", "ani": 76.4351, "matched_fragments": 73, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.03", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001642085.1", "gtdb_species": "s__Streptococcus pantholopis", "ani": 76.0448, "matched_fragments": 66, "total_fragments": 615, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }