{ "type": "genome", "identifier": "GCA_945873395.1", "organism": "uncultured Lactobacillus sp.", "title": "uncultured Lactobacillus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945873395.1", "bioproject": "PRJEB52638", "biosample": "SAMEA110402575", "wgs_master": "CAMCCW000000000.1", "refseq_category": "na", "taxid": "153152", "species_taxid": "153152", "organism_name": "uncultured Lactobacillus sp.", "infraspecific_name": "", "isolate": "SRR15732360_bin.36_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "SRR15732360_bin.36_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/873/395/GCA_945873395.1_SRR15732360_bin.36_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lactobacillus sp." ], "sample_taxid": [ "153152" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.480 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.51, "contamination": 0.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", 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"below_threshold" }, { "organism_name": "Limosilactobacillus antri", "strain": "strain=DSM 16041", "accession": "GCA_001435475.1", "taxid": 227943, "species_taxid": 227943, "relation_to_type": "type", "validated": true, "ani": 79.0868, "matched_fragments": 163, "total_fragments": 477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus avistercoris", "strain": "strain=Sa3CUN2", "accession": "GCA_014836425.1", "taxid": 2762243, "species_taxid": 2762243, "relation_to_type": "type", "validated": true, "ani": 78.8682, "matched_fragments": 97, "total_fragments": 477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus fastidiosus", "strain": "strain=WF-MO7-1", "accession": "GCA_014145505.1", "taxid": 2759855, "species_taxid": 2759855, "relation_to_type": "type", "validated": true, "ani": 78.7342, "matched_fragments": 77, "total_fragments": 477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus urinaemulieris", "strain": "strain=c9Ua_26_M", "accession": "GCA_014838745.1", "taxid": 2742600, "species_taxid": 2742600, "relation_to_type": "type", "validated": true, "ani": 78.4774, "matched_fragments": 96, "total_fragments": 477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus fermentum", "strain": "strain=DSM 20052", "accession": "GCA_013394085.1", "taxid": 1613, "species_taxid": 1613, "relation_to_type": "type", "validated": true, "ani": 77.6427, "matched_fragments": 71, "total_fragments": 477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus fermentum", "strain": "strain=B1 28", "accession": "GCA_005341425.1", "taxid": 1613, "species_taxid": 1613, "relation_to_type": "type", "validated": true, "ani": 77.5852, "matched_fragments": 73, "total_fragments": 477, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.51, "contamination": 0.46, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_002299975.1", "gtdb_species": "s__Limosilactobacillus sp002299975", "ani": 89.7733, "matched_fragments": 271, "total_fragments": 477, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.38", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019118405.1", "gtdb_species": "s__Limosilactobacillus gallistercoris", "ani": 87.3956, "matched_fragments": 277, "total_fragments": 477, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.67", "mean_intra_species_af": "0.88", "min_intra_species_af": 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"GCF_014145505.1", "gtdb_species": "s__Limosilactobacillus fastidiosus", "ani": 78.7342, "matched_fragments": 77, "total_fragments": 477, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.58", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014838745.1", "gtdb_species": "s__Limosilactobacillus urinaemulieris", "ani": 78.4349, "matched_fragments": 97, "total_fragments": 477, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.61", "min_intra_species_ani": "97.61", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": 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"o__Lactobacillales", "f__Lactobacillaceae", "g__Limosilactobacillus", "s__Limosilactobacillus sp945873395", "Bacteria", "Bacillota", "Bacilli", "Lactobacillales", "Lactobacillaceae", "Limosilactobacillus", "Limosilactobacillus", "sp945873395" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }