<?xml version="1.0" ?>
<BioSampleSet><BioSample access="public" publication_date="2022-07-21T00:00:00.000" last_update="2022-07-30T07:41:04.000" submission_date="2022-07-22T13:12:46.750" id="29899400" accession="SAMEA110401955">   <Ids>     <Id db="BioSample" is_primary="1">SAMEA110401955</Id>     <Id db="SRA">ERS12500147</Id>   </Ids>   <Description>     <Title>Metagenome-assembled genome: ERR1855535_bin.38_metaWRAP_v1.3_MAG</Title>     <Organism taxonomy_id="244328" taxonomy_name="uncultured Clostridia bacterium">       <OrganismName>uncultured Clostridia bacterium</OrganismName>     </Organism>     <Comment>       <Paragraph>This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1855535 of study ERP021695.</Paragraph>     </Comment>   </Description>   <Owner>     <Name>EBI</Name>   </Owner>   <Models>     <Model>Generic</Model>   </Models>   <Package display_name="Generic">Generic.1.0</Package>   <Attributes>     <Attribute attribute_name="ENA-CHECKLIST">ERC000047</Attribute>     <Attribute attribute_name="ENA-FIRST-PUBLIC">2022-07-21</Attribute>     <Attribute attribute_name="ENA-LAST-UPDATE">2022-07-21</Attribute>     <Attribute attribute_name="External Id">SAMEA110401955</Attribute>     <Attribute attribute_name="INSDC center alias">EMG</Attribute>     <Attribute attribute_name="INSDC center name">EMG</Attribute>     <Attribute attribute_name="INSDC first public">2022-07-21T20:27:52Z</Attribute>     <Attribute attribute_name="INSDC last update">2022-07-21T20:27:52Z</Attribute>     <Attribute attribute_name="INSDC status">public</Attribute>     <Attribute attribute_name="Submitter Id">ERR1855535_bin.38_metaWRAP_v1.3_MAG</Attribute>     <Attribute attribute_name="assembly quality">Many fragments with little to no review of assembly other than reporting of standard assembly statistics</Attribute>     <Attribute attribute_name="assembly software">metaSPAdes v3.15.3</Attribute>     <Attribute attribute_name="binning parameters">MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.</Attribute>     <Attribute attribute_name="binning software">metaWRAP v1.3</Attribute>     <Attribute attribute_name="broad-scale environmental context" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">Pig digestive system</Attribute>     <Attribute attribute_name="broker name">EMG broker account, EMBL-EBI</Attribute>     <Attribute attribute_name="collection date" harmonized_name="collection_date" display_name="collection date">2016-08-01</Attribute>     <Attribute attribute_name="completeness score">86.55</Attribute>     <Attribute attribute_name="completeness software">CheckM</Attribute>     <Attribute attribute_name="contamination score">0.23</Attribute>     <Attribute attribute_name="environmental medium" harmonized_name="env_medium" display_name="environmental medium">Feces</Attribute>     <Attribute attribute_name="geographic location (country and/or sea)" harmonized_name="geo_loc_name" display_name="geographic location">Germany</Attribute>     <Attribute attribute_name="geographic location (latitude)">52.45857</Attribute>     <Attribute attribute_name="geographic location (longitude)">13.288657</Attribute>     <Attribute attribute_name="investigation type" harmonized_name="investigation_type" display_name="investigation type">metagenome-assembled genome</Attribute>     <Attribute attribute_name="isolation_source" harmonized_name="isolation_source" display_name="isolation source">pig gut metagenome</Attribute>     <Attribute attribute_name="local environmental context">Intestine</Attribute>     <Attribute attribute_name="metagenomic source">pig gut metagenome</Attribute>     <Attribute attribute_name="project name" harmonized_name="project_name" display_name="project name">We studied the intestinal microbiome in feces from sows, five days after farrowing, their piglets during suckling and two weeks after weaning, 5-day old artificially reared and formula-fed siblings, and FP infected with Clostridium difficile.</Attribute>     <Attribute attribute_name="sample derived from">SAMEA99901168</Attribute>     <Attribute attribute_name="sample name" harmonized_name="sample_name" display_name="sample name">ERR1855535_bin.38_metaWRAP_v1.3_MAG</Attribute>     <Attribute attribute_name="sequencing method">NextSeq 500</Attribute>     <Attribute attribute_name="taxonomic classification">The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__;g__;s__</Attribute>     <Attribute attribute_name="taxonomic identity marker">multi-marker approach</Attribute>   </Attributes>   <Status status="live" when="2022-07-24T08:45:20.270"/> </BioSample> </BioSampleSet>
