{ "type": "genome", "identifier": "GCA_945873975.1", "organism": "Pseudorhodobacter antarcticus", "title": "Pseudorhodobacter antarcticus", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945873975.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110379349", "wgs_master": "CAMCFK000000000.1", "refseq_category": "na", "taxid": "1077947", "species_taxid": "1077947", "organism_name": "Pseudorhodobacter antarcticus", "infraspecific_name": "", "isolate": "GE-03apr19-204", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "GE-03apr19-204", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/873/975/GCA_945873975.1_GE-03apr19-204", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudorhodobacter antarcticus" ], "sample_taxid": [ "1077947" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria" ], "sample_host_location_id": [], "data_size": "1.562 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.79, "contamination": 5.09, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5581754", "Number of Sequences": "648", "Longest Sequences (bp)": "46130", "N50 (bp)": "10428", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.1", "Number of CDSs": "4977", "Average Protein Length": "293.9", "Coding Ratio (%)": "78.6", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 79.3451, "matched_fragments": 514, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 79.3359, "matched_fragments": 515, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 78.8101, "matched_fragments": 462, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter tardus", "strain": "strain=CYK-10", "accession": "GCA_009925085.1", "taxid": 2699202, "species_taxid": 2699202, "relation_to_type": "type", "validated": true, "ani": 78.7761, "matched_fragments": 515, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter ruber", "strain": "strain=CCP-1", "accession": "GCA_009908315.1", "taxid": 1985673, "species_taxid": 1985673, "relation_to_type": "type", "validated": true, "ani": 78.5748, "matched_fragments": 449, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter straminiformis", "strain": "strain=CAM-8", "accession": "GCA_014243445.1", "taxid": 2045119, "species_taxid": 2045119, "relation_to_type": "type", "validated": true, "ani": 78.5063, "matched_fragments": 469, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola algicola", "strain": "strain=ETT8", "accession": "GCA_010915705.1", "taxid": 2709381, "species_taxid": 2709381, "relation_to_type": "type", "validated": true, "ani": 78.496, "matched_fragments": 458, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquatilis", "strain": "strain=DSM 3857", "accession": "GCA_900110025.1", "taxid": 933059, "species_taxid": 933059, "relation_to_type": "type", "validated": true, "ani": 78.4533, "matched_fragments": 456, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola sediminis", "strain": "strain=DRYC-M-16", "accession": "GCA_004745575.1", "taxid": 2486418, "species_taxid": 2486418, "relation_to_type": "type", "validated": true, "ani": 78.4371, "matched_fragments": 436, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter calidifons", "strain": "strain=M37P", "accession": "GCA_011174775.1", "taxid": 2715277, "species_taxid": 2715277, "relation_to_type": "type", "validated": true, "ani": 78.4036, "matched_fragments": 463, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": "strain=DJC", "accession": "GCA_003443995.1", "taxid": 2305252, "species_taxid": 2305252, "relation_to_type": "type", "validated": true, "ani": 78.3113, "matched_fragments": 472, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter flagellatus", "strain": "strain=SYSU G03088", "accession": "GCA_008271465.1", "taxid": 2593021, "species_taxid": 2593021, "relation_to_type": "type", "validated": true, "ani": 78.1742, "matched_fragments": 439, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cypionkella psychrotolerans", "strain": "strain=PAMC 27389", "accession": "GCA_001294535.1", "taxid": 1678131, "species_taxid": 1678131, "relation_to_type": "type", "validated": true, "ani": 78.1644, "matched_fragments": 448, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter changlensis", "strain": "strain=DSM 18774", "accession": "GCA_003254335.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 77.9282, "matched_fragments": 396, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter changlensis", "strain": "strain=JA139", "accession": "GCA_003034985.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 77.8704, "matched_fragments": 394, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum veldkampii", "strain": "strain=DSM 11550", "accession": "GCA_004363195.1", "taxid": 33049, "species_taxid": 33049, "relation_to_type": "type", "validated": true, "ani": 77.7724, "matched_fragments": 324, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum veldkampii", "strain": "strain=DSM 11550", "accession": "GCA_003034995.1", "taxid": 33049, "species_taxid": 33049, "relation_to_type": "type", "validated": true, "ani": 77.6935, "matched_fragments": 323, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter capsulatus", "strain": "strain=DSM 1710", "accession": "GCA_003254295.1", "taxid": 1061, "species_taxid": 1061, "relation_to_type": "type", "validated": true, "ani": 77.384, "matched_fragments": 272, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodobacter wandonensis", "strain": "strain=KCTC 23672", "accession": "GCA_001202035.1", "taxid": 1120568, "species_taxid": 1120568, "relation_to_type": "type", "validated": true, "ani": 77.1862, "matched_fragments": 236, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodobacter ferrugineus", "strain": "strain=DSM 5888", "accession": "GCA_000420745.1", "taxid": 77008, "species_taxid": 77008, "relation_to_type": "type", "validated": true, "ani": 76.9323, "matched_fragments": 259, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassorhabdomicrobium marinisediminis", "strain": "strain=BH-SD16", "accession": "GCA_003072065.1", "taxid": 2170577, "species_taxid": 2170577, "relation_to_type": "type", "validated": true, "ani": 76.7745, "matched_fragments": 185, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodobacter turbinis", "strain": "strain=S12M18", "accession": "GCA_005234135.1", "taxid": 2500533, "species_taxid": 2500533, "relation_to_type": "type", "validated": true, "ani": 76.591, "matched_fragments": 196, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litorivita pollutaquae", "strain": "strain=FSX-11", "accession": "GCA_003205515.1", "taxid": 2200892, "species_taxid": 2200892, "relation_to_type": "type", "validated": true, "ani": 75.756, "matched_fragments": 107, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.79, "contamination": 5.09, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCA_001828855.1", "gtdb_species": "s__Cypionkella sp001828855", "ani": 79.6648, "matched_fragments": 569, "total_fragments": 1567, "gtdb_taxonomy": 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