{
    "type": "genome",
    "identifier": "GCA_945875235.1",
    "organism": "[Clostridium] scindens",
    "title": "[Clostridium] scindens",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945875235.1",
        "bioproject": "PRJEB52676",
        "biosample": "SAMEA110402058",
        "wgs_master": "CAMCJP000000000.1",
        "refseq_category": "na",
        "taxid": "29347",
        "species_taxid": "29347",
        "organism_name": "[Clostridium] scindens",
        "infraspecific_name": "",
        "isolate": "ERR1855542_bin.22_metaWRAP_v1.3_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "ERR1855542_bin.22_metaWRAP_v1.3_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "GCF_945875235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/875/235/GCA_945875235.1_ERR1855542_bin.22_metaWRAP_v1.3_MAG",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "[Clostridium] scindens"
        ],
        "sample_taxid": [
            "29347"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "0.894 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3127405",
        "Number of Sequences": "84",
        "Longest Sequences (bp)": "445465",
        "N50 (bp)": "87848",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.6",
        "Number of CDSs": "3133",
        "Average Protein Length": "296.2",
        "Coding Ratio (%)": "89.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "[Clostridium] scindens",
                "strain": "strain=ATCC 35704",
                "accession": "GCA_004295125.1",
                "taxid": 29347,
                "species_taxid": 29347,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.279,
                "matched_fragments": 884,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Clostridium] scindens",
                "strain": "strain=ATCC 35704",
                "accession": "GCA_000154505.1",
                "taxid": 29347,
                "species_taxid": 29347,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.2607,
                "matched_fragments": 873,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Dorea formicigenerans",
                "strain": "strain=ATCC 27755",
                "accession": "GCA_000169235.1",
                "taxid": 39486,
                "species_taxid": 39486,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.3926,
                "matched_fragments": 128,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea formicigenerans",
                "strain": "strain=ATCC 27755",
                "accession": "GCA_025150245.1",
                "taxid": 39486,
                "species_taxid": 39486,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.3102,
                "matched_fragments": 130,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_025150085.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2735,
                "matched_fragments": 182,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_000154065.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2214,
                "matched_fragments": 185,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Merdimonas faecis",
                "strain": "strain=BR31",
                "accession": "GCA_001754075.1",
                "taxid": 1653435,
                "species_taxid": 1653435,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1742,
                "matched_fragments": 212,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] hylemonae",
                "strain": "strain=DSM 15053",
                "accession": "GCA_000156515.1",
                "taxid": 89153,
                "species_taxid": 89153,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1283,
                "matched_fragments": 258,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea phocaeensis",
                "strain": "strain=Marseille-P4003",
                "accession": "GCA_900240315.1",
                "taxid": 2040291,
                "species_taxid": 2040291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1131,
                "matched_fragments": 200,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] hylemonae",
                "strain": "strain=DSM 15053",
                "accession": "GCA_008281175.1",
                "taxid": 89153,
                "species_taxid": 89153,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0867,
                "matched_fragments": 254,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sporofaciens musculi",
                "strain": "strain=WCA-9-b2",
                "accession": "GCA_009830285.1",
                "taxid": 2681861,
                "species_taxid": 2681861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0521,
                "matched_fragments": 216,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_000155205.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6136,
                "matched_fragments": 77,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_025152405.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4151,
                "matched_fragments": 79,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jingyaoa shaoxingensis",
                "strain": "strain=NSJ-46",
                "accession": "GCA_014385005.1",
                "taxid": 2763671,
                "species_taxid": 2763671,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1305,
                "matched_fragments": 57,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Diplocloster agilis",
                "strain": "strain=ASD5720",
                "accession": "GCA_019042275.1",
                "taxid": 2850323,
                "species_taxid": 2850323,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0986,
                "matched_fragments": 52,
                "total_fragments": 1001,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004295125.1",
                "gtdb_species": "s__Clostridium_AP scindens",
                "ani": 99.279,
                "matched_fragments": 883,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_AP",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "99.12",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 13,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000509125.1",
                "gtdb_species": "s__Clostridium_AP sp000509125",
                "ani": 94.7798,
                "matched_fragments": 780,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_AP",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.12",
                "min_intra_species_ani": "98.62",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001404875.1",
                "gtdb_species": "s__Dorea_A longicatena_B",
                "ani": 78.6189,
                "matched_fragments": 166,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.75",
                "min_intra_species_ani": "96.72",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCA_910576335.1",
                "gtdb_species": "s__UBA7109 sp910576335",
                "ani": 78.2922,
                "matched_fragments": 140,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA7109",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "98.92",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000154065.1",
                "gtdb_species": "s__Dorea_A longicatena",
                "ani": 78.2214,
                "matched_fragments": 185,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "97.61",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 49,
                "status": "-"
            },
            {
                "accession": "GCF_000403455.2",
                "gtdb_species": "s__Sporofaciens sp000403455",
                "ani": 78.2085,
                "matched_fragments": 242,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Sporofaciens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.91",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910574885.1",
                "gtdb_species": "s__Sporofaciens sp910574885",
                "ani": 78.2035,
                "matched_fragments": 207,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Sporofaciens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_910575835.1",
                "gtdb_species": "s__Sporofaciens sp910575835",
                "ani": 78.1878,
                "matched_fragments": 242,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Sporofaciens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900240315.1",
                "gtdb_species": "s__Dorea_B phocaeensis",
                "ani": 78.1131,
                "matched_fragments": 200,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "97.28",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_004345005.1",
                "gtdb_species": "s__Extibacter muris",
                "ani": 78.1008,
                "matched_fragments": 284,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Extibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.70",
                "min_intra_species_ani": "95.67",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_003435815.1",
                "gtdb_species": "s__CAG-317 sp000433215",
                "ani": 78.0832,
                "matched_fragments": 162,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-317",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "98.41",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_009830285.1",
                "gtdb_species": "s__Sporofaciens musculi",
                "ani": 78.0521,
                "matched_fragments": 216,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Sporofaciens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "97.71",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_910585725.1",
                "gtdb_species": "s__Sporofaciens sp910585725",
                "ani": 77.984,
                "matched_fragments": 197,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Sporofaciens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910574715.1",
                "gtdb_species": "s__Sporofaciens sp910574715",
                "ani": 77.9836,
                "matched_fragments": 263,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Sporofaciens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.89",
                "min_intra_species_ani": "98.89",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910579015.1",
                "gtdb_species": "s__Sporofaciens sp910579015",
                "ani": 77.7604,
                "matched_fragments": 220,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Sporofaciens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910577685.1",
                "gtdb_species": "s__Sporofaciens sp910577685",
                "ani": 77.6742,
                "matched_fragments": 191,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Sporofaciens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910575605.1",
                "gtdb_species": "s__UBA7109 sp910575605",
                "ani": 77.6396,
                "matched_fragments": 146,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA7109",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.27",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900550865.1",
                "gtdb_species": "s__Dorea_A sp900550865",
                "ani": 77.5904,
                "matched_fragments": 158,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Dorea_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910584575.1",
                "gtdb_species": "s__Sporofaciens sp910584575",
                "ani": 77.2289,
                "matched_fragments": 192,
                "total_fragments": 1001,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Sporofaciens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 36.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 3766146.0,
        "gc_content": 46.4,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Clostridium_AP",
        "s__Clostridium_AP scindens"
    ],
    "_genome_taxon": [
        "[Clostridium]",
        "scindens",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Clostridium_AP",
        "s__Clostridium_AP scindens",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Clostridium",
        "AP",
        "Clostridium",
        "AP",
        "scindens"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}