{
    "type": "genome",
    "identifier": "GCA_945876565.1",
    "organism": "Lautropia mirabilis",
    "title": "Lautropia mirabilis",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945876565.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110379913",
        "wgs_master": "CAMCOS000000000.1",
        "refseq_category": "na",
        "taxid": "47671",
        "species_taxid": "47671",
        "organism_name": "Lautropia mirabilis",
        "infraspecific_name": "",
        "isolate": "MiE-22jul19-47",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "MiE-22jul19-47",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/876/565/GCA_945876565.1_MiE-22jul19-47",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lautropia mirabilis"
        ],
        "sample_taxid": [
            "47671"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "0.810 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2824622",
        "Number of Sequences": "89",
        "Longest Sequences (bp)": "159924",
        "N50 (bp)": "54419",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.4",
        "Number of CDSs": "2703",
        "Average Protein Length": "306.8",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Orrella marina",
                "strain": "strain=HZ20",
                "accession": "GCA_003058465.1",
                "taxid": 2163011,
                "species_taxid": 2163011,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4596,
                "matched_fragments": 89,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter xylosoxidans",
                "strain": "strain=PartM-Axylosoxidans-RM8376",
                "accession": "GCA_022870085.1",
                "taxid": 85698,
                "species_taxid": 85698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.437,
                "matched_fragments": 67,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella bronchialis",
                "strain": "strain=AU3182",
                "accession": "GCA_001676705.1",
                "taxid": 463025,
                "species_taxid": 463025,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3898,
                "matched_fragments": 59,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella pseudohinzii",
                "strain": "strain=8-296-03",
                "accession": "GCA_000657795.2",
                "taxid": 1331258,
                "species_taxid": 1331258,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3325,
                "matched_fragments": 67,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter animicus",
                "strain": "strain=LMG 26690",
                "accession": "GCA_902859585.1",
                "taxid": 1389935,
                "species_taxid": 1389935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2825,
                "matched_fragments": 60,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella hinzii",
                "strain": "strain=NCTC13199",
                "accession": "GCA_900637615.1",
                "taxid": 103855,
                "species_taxid": 103855,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2739,
                "matched_fragments": 57,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter deleyi",
                "strain": "strain=LMG 3458",
                "accession": "GCA_902859705.1",
                "taxid": 1353891,
                "species_taxid": 1353891,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2392,
                "matched_fragments": 75,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella hinzii",
                "strain": "strain=LMG 13501",
                "accession": "GCA_001548475.1",
                "taxid": 103855,
                "species_taxid": 103855,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2237,
                "matched_fragments": 57,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter insolitus",
                "strain": "strain=NCTC 13520",
                "accession": "GCA_024168865.1",
                "taxid": 217204,
                "species_taxid": 217204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2146,
                "matched_fragments": 60,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter insolitus",
                "strain": "strain=LMG 6003",
                "accession": "GCA_002209555.1",
                "taxid": 217204,
                "species_taxid": 217204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1637,
                "matched_fragments": 61,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter insolitus",
                "strain": "strain=NCTC13520",
                "accession": "GCA_900637265.1",
                "taxid": 217204,
                "species_taxid": 217204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1637,
                "matched_fragments": 61,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter insolitus",
                "strain": "strain=LMG 6003",
                "accession": "GCA_902859615.1",
                "taxid": 217204,
                "species_taxid": 217204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1346,
                "matched_fragments": 61,
                "total_fragments": 893,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_007116135.1",
                "gtdb_species": "s__Algicoccus sp007116135",
                "ani": 77.0905,
                "matched_fragments": 145,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Algicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002119665.1",
                "gtdb_species": "s__Bordetella_B sp002119665",
                "ani": 76.5064,
                "matched_fragments": 62,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000067205.1",
                "gtdb_species": "s__Bordetella_A petrii",
                "ani": 76.4652,
                "matched_fragments": 62,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003058465.1",
                "gtdb_species": "s__Algicoccus marinus",
                "ani": 76.4596,
                "matched_fragments": 89,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Algicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013116765.2",
                "gtdb_species": "s__Achromobacter deleyi_A",
                "ani": 76.4338,
                "matched_fragments": 55,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009763255.1",
                "gtdb_species": "s__Bordetella_A sp009763255",
                "ani": 76.3946,
                "matched_fragments": 61,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "97.90",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001676705.1",
                "gtdb_species": "s__Bordetella_C bronchialis",
                "ani": 76.3898,
                "matched_fragments": 59,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "99.23",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002119685.1",
                "gtdb_species": "s__Bordetella_C sp002119685",
                "ani": 76.3814,
                "matched_fragments": 59,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000657795.2",
                "gtdb_species": "s__Bordetella pseudohinzii",
                "ani": 76.3325,
                "matched_fragments": 67,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_002261425.1",
                "gtdb_species": "s__Bordetella_C sp002261425",
                "ani": 76.2386,
                "matched_fragments": 65,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003600685.1",
                "gtdb_species": "s__Achromobacter spanius_B",
                "ani": 76.1886,
                "matched_fragments": 78,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.20",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_002209555.1",
                "gtdb_species": "s__Achromobacter insolitus",
                "ani": 76.1637,
                "matched_fragments": 61,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.13",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_000165835.1",
                "gtdb_species": "s__Achromobacter xylosoxidans_B",
                "ani": 76.1584,
                "matched_fragments": 61,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.34",
                "min_intra_species_ani": "96.34",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002885955.2",
                "gtdb_species": "s__Achromobacter pulmonis_A",
                "ani": 76.1289,
                "matched_fragments": 66,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_017745595.1",
                "gtdb_species": "s__Bordetella_A petrii_C",
                "ani": 75.9554,
                "matched_fragments": 78,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002192695.1",
                "gtdb_species": "s__Achromobacter xylosoxidans_C",
                "ani": 75.8989,
                "matched_fragments": 67,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009857885.1",
                "gtdb_species": "s__Pusillimonas_B sp009857885",
                "ani": 75.5072,
                "matched_fragments": 50,
                "total_fragments": 893,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pusillimonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 35.0,
        "optimum_tmp": 35.0,
        "optimum_ph": null,
        "genome_size": 3137198.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Algicoccus",
        "s__Algicoccus sp945876565"
    ],
    "_genome_taxon": [
        "Lautropia",
        "mirabilis",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Algicoccus",
        "s__Algicoccus sp945876565",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Algicoccus",
        "Algicoccus",
        "sp945876565"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}