{ "type": "genome", "identifier": "GCA_945876895.1", "organism": "uncultured Streptococcus sp.", "title": "uncultured Streptococcus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945876895.1", "bioproject": "PRJEB52638", "biosample": "SAMEA110402588", "wgs_master": "CAMCQB000000000.1", "refseq_category": "na", "taxid": "83427", "species_taxid": "83427", "organism_name": "uncultured Streptococcus sp.", "infraspecific_name": "", "isolate": "SRR15732362_bin.9_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "SRR15732362_bin.9_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/876/895/GCA_945876895.1_SRR15732362_bin.9_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Streptococcus sp." ], "sample_taxid": [ "83427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.455 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.5, "contamination": 0.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1596934", "Number of Sequences": "142", "Longest Sequences (bp)": "70068", "N50 (bp)": "15433", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.1", "Number of CDSs": "1469", "Average Protein Length": "295.4", "Coding Ratio (%)": "81.5", "Number of rRNAs": "0", "Number of tRNAs": "10", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus plurextorum", "strain": "strain=DSM 22810", "accession": "GCA_000423745.1", "taxid": 456876, "species_taxid": 456876, "relation_to_type": "type", "validated": true, "ani": 79.928, "matched_fragments": 87, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8577, "matched_fragments": 97, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus porci", "strain": "strain=DSM 23759", "accession": "GCA_000423765.1", "taxid": 502567, "species_taxid": 502567, "relation_to_type": "type", "validated": true, "ani": 79.6907, "matched_fragments": 98, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus orisratti", "strain": "strain=DSM 15617", "accession": "GCA_000380105.1", "taxid": 114652, "species_taxid": 114652, "relation_to_type": "type", "validated": true, "ani": 79.4625, "matched_fragments": 119, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gallolyticus", "strain": "strain=NCTC13773", "accession": "GCA_900475715.1", "taxid": 315405, "species_taxid": 315405, "relation_to_type": "suspected-type", "validated": true, "ani": 78.1943, "matched_fragments": 94, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gallolyticus subsp. gallolyticus", "strain": "strain=DSM 16831", "accession": "GCA_002000985.1", "taxid": 53354, "species_taxid": 315405, "relation_to_type": "type", "validated": true, "ani": 78.138, "matched_fragments": 95, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 78.0466, "matched_fragments": 75, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=NCTC13760", "accession": "GCA_900459445.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 77.6522, "matched_fragments": 114, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=FDAARGOS_1019", "accession": "GCA_016127275.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 77.6444, "matched_fragments": 113, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius subsp. infantarius", "strain": "strain=ATCC BAA-102", "accession": "GCA_000154985.1", "taxid": 150054, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 77.5902, "matched_fragments": 113, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus canis", "strain": "strain=NCTC12191", "accession": "GCA_900636575.1", "taxid": 1329, "species_taxid": 1329, "relation_to_type": "type", "validated": true, "ani": 77.5837, "matched_fragments": 85, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vestibularis", "strain": "strain=ATCC 49124", "accession": "GCA_000188295.1", "taxid": 1343, "species_taxid": 1343, "relation_to_type": "type", "validated": true, "ani": 77.501, "matched_fragments": 96, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus halotolerans", "strain": "strain=HTS9", "accession": "GCA_001598035.1", "taxid": 1814128, "species_taxid": 1814128, "relation_to_type": "type", "validated": true, "ani": 77.2687, "matched_fragments": 83, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 77.1781, "matched_fragments": 72, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=FDAARGOS_774", "accession": "GCA_006364235.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 77.1723, "matched_fragments": 81, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=ATCC 27823", "accession": "GCA_008633005.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 77.1254, "matched_fragments": 70, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=CCUG 4207", "accession": "GCA_001982785.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 77.0657, "matched_fragments": 84, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=DSM 20565", "accession": "GCA_000421785.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 77.0531, "matched_fragments": 85, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=NCTC8198", "accession": "GCA_002055535.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 77.0398, "matched_fragments": 83, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pyogenes", "strain": "strain=CCUG 4207", "accession": "GCA_004028355.1", "taxid": 1314, "species_taxid": 1314, "relation_to_type": "type", "validated": true, "ani": 77.0209, "matched_fragments": 82, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. pharyngis", "strain": "strain=CCUG 46377", "accession": "GCA_000474135.1", "taxid": 184250, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 76.9423, "matched_fragments": 65, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. zooepidemicus", "strain": "strain=NCTC4676", "accession": "GCA_900459475.1", "taxid": 40041, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 76.9335, "matched_fragments": 71, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus macacae", "strain": "strain=NCTC 11558", "accession": "GCA_900459485.1", "taxid": 1339, "species_taxid": 1339, "relation_to_type": "type", "validated": true, "ani": 76.3989, "matched_fragments": 66, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus macacae", "strain": "strain=NCTC 11558", "accession": "GCA_000187995.3", "taxid": 1339, "species_taxid": 1339, "relation_to_type": "type", "validated": true, "ani": 76.3709, "matched_fragments": 68, "total_fragments": 467, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 62.5, "contamination": 0.46, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_002964575.1", "gtdb_species": "s__Streptococcus suis_R", "ani": 80.2895, "matched_fragments": 98, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002960425.1", "gtdb_species": "s__Streptococcus suis_S", "ani": 80.0143, "matched_fragments": 100, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.81", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000440115.1", "gtdb_species": "s__Streptococcus suis_L", "ani": 79.9956, "matched_fragments": 100, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000440555.1", "gtdb_species": "s__Streptococcus suis_N", "ani": 79.8956, "matched_fragments": 94, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.61", "min_intra_species_ani": "95.42", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.79", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000423765.1", "gtdb_species": "s__Streptococcus porci", "ani": 79.7517, "matched_fragments": 99, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000380105.1", "gtdb_species": "s__Streptococcus orisratti", "ani": 79.4625, "matched_fragments": 119, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004283785.1", "gtdb_species": "s__Streptococcus parasuis", "ani": 78.5242, "matched_fragments": 86, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.19", "min_intra_species_ani": "96.80", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.77", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_002000985.1", "gtdb_species": "s__Streptococcus gallolyticus", "ani": 78.138, "matched_fragments": 95, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 96.3165, "mean_intra_species_ani": "98.04", "min_intra_species_ani": "96.86", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.79", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCF_900101445.1", "gtdb_species": "s__Streptococcus equinus_B", "ani": 77.9381, "matched_fragments": 95, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.02", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_003337175.1", "gtdb_species": "s__Streptococcus gallolyticus_B", "ani": 77.8116, "matched_fragments": 91, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.6693, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000420785.1", "gtdb_species": "s__Streptococcus hyovaginalis", "ani": 77.7201, "matched_fragments": 96, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.13", "min_intra_species_ani": "96.18", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.79", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001814775.1", "gtdb_species": "s__Streptococcus sp001814775", "ani": 77.6458, "matched_fragments": 64, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012843315.1", "gtdb_species": "s__Streptococcus sp012843315", "ani": 77.6182, "matched_fragments": 75, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000154985.1", "gtdb_species": "s__Streptococcus infantarius", "ani": 77.5902, "matched_fragments": 113, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.67", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_003595525.1", "gtdb_species": "s__Streptococcus respiraculi", "ani": 77.522, "matched_fragments": 64, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000188295.1", "gtdb_species": "s__Streptococcus vestibularis", "ani": 77.5085, "matched_fragments": 95, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "95.83", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCA_001578795.1", "gtdb_species": "s__Streptococcus gordonii_A", "ani": 77.4552, "matched_fragments": 66, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900459125.1", "gtdb_species": "s__Streptococcus constellatus", "ani": 77.2137, "matched_fragments": 70, "total_fragments": 467, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.83", "min_intra_species_ani": "96.57", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 32, "status": "-" }, { "accession": "GCF_001578705.1", "gtdb_species": "s__Streptococcus oralis_J", "ani": 77.1827, "matched_fragments": 68, "total_fragments": 467, "gtdb_taxonomy": 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