{ "type": "genome", "identifier": "GCA_945877355.1", "organism": "uncultured Mitsuokella sp.", "title": "uncultured Mitsuokella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945877355.1", "bioproject": "PRJEB52638", "biosample": "SAMEA110402560", "wgs_master": "CAMCRT000000000.1", "refseq_category": "na", "taxid": "453120", "species_taxid": "453120", "organism_name": "uncultured Mitsuokella sp.", "infraspecific_name": "", "isolate": "SRR15732360_bin.18_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "SRR15732360_bin.18_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/877/355/GCA_945877355.1_SRR15732360_bin.18_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Mitsuokella sp." ], "sample_taxid": [ "453120" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.725 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2554246", "Number of Sequences": "127", "Longest Sequences (bp)": "120830", "N50 (bp)": "30913", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.4", "Number of CDSs": "2305", "Average Protein Length": "311.9", "Coding Ratio (%)": "84.4", "Number of rRNAs": "2", "Number of tRNAs": "41", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mitsuokella jalaludinii", "strain": "strain=DSM 13811", "accession": "GCA_000702905.1", "taxid": 187979, "species_taxid": 187979, "relation_to_type": "type", "validated": true, "ani": 78.5227, "matched_fragments": 229, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mitsuokella multacida", "strain": "strain=DSM 20544", "accession": "GCA_000155955.1", "taxid": 52226, "species_taxid": 52226, "relation_to_type": "type", "validated": true, "ani": 78.4751, "matched_fragments": 248, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas felix", "strain": "strain=Marseille-P3560", "accession": "GCA_900186465.1", "taxid": 1944634, "species_taxid": 1944634, "relation_to_type": "type", "validated": true, "ani": 77.3414, "matched_fragments": 100, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas artemidis", "strain": "strain=DSM 19719", "accession": "GCA_000426665.1", "taxid": 671224, "species_taxid": 671224, "relation_to_type": "type", "validated": true, "ani": 77.3091, "matched_fragments": 76, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas sputigena", "strain": "strain=ATCC 35185", "accession": "GCA_000160495.1", "taxid": 69823, "species_taxid": 69823, "relation_to_type": "neotype", "validated": true, "ani": 77.1346, "matched_fragments": 124, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas sputigena", "strain": "strain=ATCC 35185", "accession": "GCA_000208405.1", "taxid": 69823, "species_taxid": 69823, "relation_to_type": "neotype", "validated": true, "ani": 77.0528, "matched_fragments": 125, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas montiformis", "strain": "strain=WCA-380-WT-3B3", "accession": "GCA_009697385.1", "taxid": 2652285, "species_taxid": 2652285, "relation_to_type": "type", "validated": true, "ani": 76.8586, "matched_fragments": 93, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerovibrio slackiae", "strain": "strain=WCA-693-APC-5D-A", "accession": "GCA_009695585.1", "taxid": 2652309, "species_taxid": 2652309, "relation_to_type": "type", "validated": true, "ani": 75.9534, "matched_fragments": 69, "total_fragments": 788, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902364065.1", "gtdb_species": "s__Mitsuokella sp003458855", "ani": 78.508, "matched_fragments": 199, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "95.79", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.62", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000702905.1", "gtdb_species": "s__Mitsuokella jalaludinii", "ani": 78.5047, "matched_fragments": 230, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.12", "min_intra_species_ani": "97.46", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_000155955.1", "gtdb_species": "s__Mitsuokella multacida", "ani": 78.4751, "matched_fragments": 248, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "96.22", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000381005.1", "gtdb_species": "s__Selenomonas_C bovis", "ani": 78.2793, "matched_fragments": 211, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.36", "min_intra_species_ani": "95.92", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_902780535.1", "gtdb_species": "s__Selenomonas_C sp902780535", "ani": 78.1852, "matched_fragments": 188, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.25", "min_intra_species_ani": "96.14", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.79", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900318215.1", "gtdb_species": "s__Selenomonas_C sp900318215", "ani": 78.012, "matched_fragments": 174, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "97.85", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.79", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000469545.1", "gtdb_species": "s__Mitsuokella sp000469545", "ani": 77.9329, "matched_fragments": 150, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.87", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000702545.1", "gtdb_species": "s__Selenomonas_B ruminantium_A", "ani": 77.7247, "matched_fragments": 178, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.24", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.73", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017635515.1", "gtdb_species": "s__Selenomonas_B sp017635515", "ani": 77.6902, "matched_fragments": 173, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002350105.1", "gtdb_species": "s__UBA2897 sp002350105", "ani": 77.6703, "matched_fragments": 172, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__UBA2897", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "98.43", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.80", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_900552565.1", "gtdb_species": "s__Mitsuokella sp900552565", "ani": 77.4127, "matched_fragments": 140, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900100835.1", "gtdb_species": "s__Selenomonas_A ruminantium_E", "ani": 77.1856, "matched_fragments": 94, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902801565.1", "gtdb_species": "s__UBA3796 sp902801565", "ani": 77.0367, "matched_fragments": 138, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__UBA3796", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.11", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900316275.1", "gtdb_species": "s__UBA2897 sp900316275", "ani": 76.9919, "matched_fragments": 146, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__UBA2897", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017444295.1", "gtdb_species": "s__UBA3796 sp017444295", "ani": 76.9318, "matched_fragments": 112, "total_fragments": 788, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__UBA3796", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 38.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 2493557.0, "gc_content": 58.01, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_C", "c__Negativicutes", "o__Selenomonadales", "f__Selenomonadaceae", "g__AWVT01", "s__AWVT01 sp945877355" ], "_genome_taxon": [ "uncultured", "Mitsuokella", "sp.", "d__Bacteria", "p__Bacillota_C", "c__Negativicutes", "o__Selenomonadales", "f__Selenomonadaceae", "g__AWVT01", "s__AWVT01 sp945877355", "Bacteria", "Bacillota", "C", "Negativicutes", "Selenomonadales", "Selenomonadaceae", "AWVT01", "AWVT01", "sp945877355" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }