{
    "type": "genome",
    "identifier": "GCA_945877705.1",
    "organism": "Akkermansia muciniphila",
    "title": "Akkermansia muciniphila",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945877705.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110380055",
        "wgs_master": "CAMCSL000000000.1",
        "refseq_category": "na",
        "taxid": "239935",
        "species_taxid": "239935",
        "organism_name": "Akkermansia muciniphila",
        "infraspecific_name": "",
        "isolate": "MoE-02may19-71",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "MoE-02may19-71",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/877/705/GCA_945877705.1_MoE-02may19-71",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Akkermansia muciniphila"
        ],
        "sample_taxid": [
            "239935"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Austria"
        ],
        "sample_host_location_id": [],
        "data_size": "0.780 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2801460",
        "Number of Sequences": "399",
        "Longest Sequences (bp)": "22480",
        "N50 (bp)": "8349",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.6",
        "Number of CDSs": "1980",
        "Average Protein Length": "336.8",
        "Coding Ratio (%)": "71.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Chthoniobacter flavus",
                "strain": "strain=DSM 22515",
                "accession": "GCA_004341915.1",
                "taxid": 191863,
                "species_taxid": 191863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8591,
                "matched_fragments": 81,
                "total_fragments": 762,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prosthecobacter vanneervenii",
                "strain": "strain=DSM 12252",
                "accession": "GCA_014203095.1",
                "taxid": 48466,
                "species_taxid": 48466,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.85,
                "matched_fragments": 53,
                "total_fragments": 762,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chthoniobacter flavus",
                "strain": "strain=Ellin428",
                "accession": "GCA_000173075.1",
                "taxid": 191863,
                "species_taxid": 191863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8284,
                "matched_fragments": 82,
                "total_fragments": 762,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Plesiocystis pacifica",
                "strain": "strain=SIR-1",
                "accession": "GCA_000170895.1",
                "taxid": 191768,
                "species_taxid": 191768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.664,
                "matched_fragments": 53,
                "total_fragments": 762,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea basaltis",
                "strain": "strain=160415",
                "accession": "GCA_005893125.1",
                "taxid": 2495887,
                "species_taxid": 2495887,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6378,
                "matched_fragments": 61,
                "total_fragments": 762,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 2.08,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_009695395.1",
                "gtdb_species": "s__SXTU01 sp009695395",
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                "matched_fragments": 476,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__SXTU01;g__SXTU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_005791875.1",
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                "matched_fragments": 600,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__SXTU01;g__SXTU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.31",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_016235545.1",
                "gtdb_species": "s__SXTU01 sp016235545",
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                "matched_fragments": 606,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__SXTU01;g__SXTU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009773355.1",
                "gtdb_species": "s__SXTU01 sp009773355",
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                "matched_fragments": 644,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__SXTU01;g__SXTU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903863315.1",
                "gtdb_species": "s__SXTU01 sp903863315",
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                "matched_fragments": 502,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__SXTU01;g__SXTU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009922615.1",
                "gtdb_species": "s__SXTU01 sp009922615",
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                "matched_fragments": 575,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__SXTU01;g__SXTU01",
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                "mean_intra_species_ani": "99.88",
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                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
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                "status": "-"
            },
            {
                "accession": "GCA_016871445.1",
                "gtdb_species": "s__SXTU01 sp016871445",
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                "matched_fragments": 439,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__SXTU01;g__SXTU01",
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                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016199935.1",
                "gtdb_species": "s__JACQFS01 sp016199935",
                "ani": 78.2823,
                "matched_fragments": 319,
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__JACQFS01;g__JACQFS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903916195.1",
                "gtdb_species": "s__CAIVQB01 sp903916195",
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                "matched_fragments": 179,
                "total_fragments": 762,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA9464;g__CAIVQB01",
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                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2687294.429,
        "gc_content": 55.767,
        "coding_genes": 2234.25,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 52.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Limisphaerales",
        "f__SXTU01",
        "g__SXTU01",
        "s__SXTU01 sp945872195"
    ],
    "_genome_taxon": [
        "Akkermansia",
        "muciniphila",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Limisphaerales",
        "f__SXTU01",
        "g__SXTU01",
        "s__SXTU01 sp945872195",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Limisphaerales",
        "SXTU01",
        "SXTU01",
        "SXTU01",
        "sp945872195"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}