{ "type": "genome", "identifier": "GCA_945878095.1", "organism": "Bifidobacterium thermophilum", "title": "Bifidobacterium thermophilum", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945878095.1", "bioproject": "PRJEB52676", "biosample": "SAMEA110402109", "wgs_master": "CAMCSY000000000.1", "refseq_category": "na", "taxid": "33905", "species_taxid": "33905", "organism_name": "Bifidobacterium thermophilum", "infraspecific_name": "", "isolate": "ERR1855545_bin.20_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "ERR1855545_bin.20_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/878/095/GCA_945878095.1_ERR1855545_bin.20_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium thermophilum" ], "sample_taxid": [ "33905" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.507 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 64.06, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", 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"ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium boum", "strain": "strain=DSM 20432", "accession": "GCA_000687615.1", "taxid": 78343, "species_taxid": 78343, "relation_to_type": "type", "validated": true, "ani": 97.6308, "matched_fragments": 447, "total_fragments": 481, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium porcinum", "strain": "strain=DSM 17755", "accession": "GCA_000771045.1", "taxid": 212365, "species_taxid": 212365, "relation_to_type": "type", "validated": true, "ani": 85.6172, "matched_fragments": 381, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium thermacidophilum subsp. thermacidophilum", "strain": "strain=DSM 15837", "accession": "GCA_000426425.1", "taxid": 79262, "species_taxid": 246618, "relation_to_type": "type", "validated": true, "ani": 84.9651, "matched_fragments": 372, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium thermacidophilum subsp. thermacidophilum", "strain": "strain=LMG 21395", "accession": "GCA_000741455.1", "taxid": 79262, "species_taxid": 246618, "relation_to_type": "type", "validated": true, "ani": 84.9392, "matched_fragments": 372, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 79.2174, "matched_fragments": 169, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium adolescentis", "strain": "strain=NCTC11814", "accession": "GCA_900445615.1", "taxid": 1680, "species_taxid": 1680, "relation_to_type": "type", "validated": true, "ani": 78.9364, "matched_fragments": 177, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium adolescentis", "strain": "strain=ATCC 15703", "accession": "GCA_000010425.1", "taxid": 1680, "species_taxid": 1680, "relation_to_type": "type", "validated": true, "ani": 78.9299, "matched_fragments": 180, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium pseudolongum subsp. pseudolongum", "strain": "strain=ATCC 25526", "accession": "GCA_022691205.1", "taxid": 31954, "species_taxid": 1694, "relation_to_type": "type", "validated": true, "ani": 77.8575, "matched_fragments": 129, "total_fragments": 481, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 64.06, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000741535.1", "gtdb_species": "s__Bifidobacterium boum", "ani": 97.6562, "matched_fragments": 445, "total_fragments": 481, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "97.54", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCA_000741495.1", "gtdb_species": "s__Bifidobacterium thermophilum_A", "ani": 94.7939, "matched_fragments": 441, "total_fragments": 481, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000771265.1", "gtdb_species": "s__Bifidobacterium thermophilum", "ani": 85.645, "matched_fragments": 384, "total_fragments": 481, "gtdb_taxonomy": 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