{
    "type": "genome",
    "identifier": "GCA_945878385.1",
    "organism": "Azohydromonas lata NBRC 102462",
    "title": "Azohydromonas lata NBRC 102462",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945878385.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110380204",
        "wgs_master": "CAMCTE000000000.1",
        "refseq_category": "na",
        "taxid": "1314749",
        "species_taxid": "45677",
        "organism_name": "Azohydromonas lata NBRC 102462",
        "infraspecific_name": "",
        "isolate": "MsE-30jul19-236",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "MsE-30jul19-236",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/878/385/GCA_945878385.1_MsE-30jul19-236",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Azohydromonas lata NBRC 102462"
        ],
        "sample_taxid": [
            "1314749"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "0.715 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.48,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2582131",
        "Number of Sequences": "274",
        "Longest Sequences (bp)": "49716",
        "N50 (bp)": "11666",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.3",
        "Number of CDSs": "2148",
        "Average Protein Length": "326.8",
        "Coding Ratio (%)": "81.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ideonella dechloratans",
                "strain": "strain=CCUG 30977",
                "accession": "GCA_008801845.1",
                "taxid": 36863,
                "species_taxid": 36863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.613,
                "matched_fragments": 311,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella dechloratans",
                "strain": "strain=CCUG 30977",
                "accession": "GCA_021049305.1",
                "taxid": 36863,
                "species_taxid": 36863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5187,
                "matched_fragments": 319,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azohydromonas lata",
                "strain": "strain=NBRC 102462",
                "accession": "GCA_001571085.1",
                "taxid": 45677,
                "species_taxid": 45677,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4889,
                "matched_fragments": 332,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella benzenivorans",
                "strain": "strain=B7",
                "accession": "GCA_020387415.1",
                "taxid": 2831643,
                "species_taxid": 2831643,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3339,
                "matched_fragments": 305,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azohydromonas australica",
                "strain": "strain=DSM 1124",
                "accession": "GCA_000430725.1",
                "taxid": 364039,
                "species_taxid": 364039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2908,
                "matched_fragments": 360,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azohydromonas aeria",
                "strain": "strain=CFCC 13393",
                "accession": "GCA_009760915.1",
                "taxid": 2590212,
                "species_taxid": 2590212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1722,
                "matched_fragments": 360,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella azotifigens",
                "strain": "strain=DSM 21438",
                "accession": "GCA_006519715.1",
                "taxid": 513160,
                "species_taxid": 513160,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1589,
                "matched_fragments": 260,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azohydromonas caseinilytica",
                "strain": "strain=G-1-1-14",
                "accession": "GCA_012927045.1",
                "taxid": 2728836,
                "species_taxid": 2728836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1198,
                "matched_fragments": 358,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelomonas puraquae",
                "strain": "strain=CCUG 52769",
                "accession": "GCA_002205845.1",
                "taxid": 431059,
                "species_taxid": 431059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0172,
                "matched_fragments": 313,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquabacterium soli",
                "strain": "strain=SJQ9",
                "accession": "GCA_003933735.1",
                "taxid": 2493092,
                "species_taxid": 2493092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9948,
                "matched_fragments": 253,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubrivivax gelatinosus",
                "strain": "strain=DSM 1709",
                "accession": "GCA_016583525.1",
                "taxid": 28068,
                "species_taxid": 28068,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.9043,
                "matched_fragments": 296,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus sulfidivorans",
                "strain": "strain=D-501",
                "accession": "GCA_013426975.1",
                "taxid": 639200,
                "species_taxid": 639200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8808,
                "matched_fragments": 295,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schlegelella thermodepolymerans",
                "strain": "strain=DSM 15344",
                "accession": "GCA_003349825.1",
                "taxid": 215580,
                "species_taxid": 215580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7234,
                "matched_fragments": 306,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Inhella proteolytica",
                "strain": "strain=1Y17",
                "accession": "GCA_016093275.1",
                "taxid": 2795029,
                "species_taxid": 2795029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6991,
                "matched_fragments": 301,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schlegelella thermodepolymerans",
                "strain": "strain=DSM 15344",
                "accession": "GCA_002933415.1",
                "taxid": 215580,
                "species_taxid": 215580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6706,
                "matched_fragments": 301,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schlegelella thermodepolymerans",
                "strain": "strain=DSM 15344",
                "accession": "GCA_015476235.1",
                "taxid": 215580,
                "species_taxid": 215580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6158,
                "matched_fragments": 306,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Variovorax boronicumulans",
                "strain": "strain=NBRC 103145",
                "accession": "GCA_001591345.1",
                "taxid": 436515,
                "species_taxid": 436515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4054,
                "matched_fragments": 300,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseateles terrae",
                "strain": "strain=CECT 7247",
                "accession": "GCA_014192155.1",
                "taxid": 431060,
                "species_taxid": 431060,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3765,
                "matched_fragments": 269,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter agri",
                "strain": "strain=G-1-2-2",
                "accession": "GCA_012927085.1",
                "taxid": 2728837,
                "species_taxid": 2728837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1441,
                "matched_fragments": 294,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.48,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_009923315.1",
                "gtdb_species": "s__RFTU01 sp009923315",
                "ani": 82.4969,
                "matched_fragments": 475,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__RFTU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.55",
                "min_intra_species_ani": "99.38",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_009925955.1",
                "gtdb_species": "s__RFTU01 sp009925955",
                "ani": 82.3782,
                "matched_fragments": 240,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__RFTU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009918225.1",
                "gtdb_species": "s__RFTU01 sp009918225",
                "ani": 81.3,
                "matched_fragments": 335,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__RFTU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016868355.1",
                "gtdb_species": "s__RFTU01 sp016868355",
                "ani": 80.5903,
                "matched_fragments": 445,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__RFTU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000969605.1",
                "gtdb_species": "s__Aquincola tertiaricarbonis",
                "ani": 79.6096,
                "matched_fragments": 369,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquincola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008801845.1",
                "gtdb_species": "s__Ideonella dechloratans",
                "ani": 79.587,
                "matched_fragments": 314,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ideonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001571085.1",
                "gtdb_species": "s__Azohydromonas lata",
                "ani": 79.489,
                "matched_fragments": 332,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Azohydromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017302505.1",
                "gtdb_species": "s__Rubrivivax sp017302505",
                "ani": 79.4446,
                "matched_fragments": 292,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rubrivivax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000244995.1",
                "gtdb_species": "s__Aquabacterium_A sp000244995",
                "ani": 79.364,
                "matched_fragments": 392,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012927045.1",
                "gtdb_species": "s__Azohydromonas caseinilytica",
                "ani": 79.1328,
                "matched_fragments": 357,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Azohydromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016213265.1",
                "gtdb_species": "s__Ideonella sp016213265",
                "ani": 78.9942,
                "matched_fragments": 327,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ideonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015476235.1",
                "gtdb_species": "s__Schlegelella thermodepolymerans",
                "ani": 78.6163,
                "matched_fragments": 306,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Schlegelella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_003574675.1",
                "gtdb_species": "s__Calidifontimicrobium sediminis",
                "ani": 78.565,
                "matched_fragments": 283,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Calidifontimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.54",
                "min_intra_species_ani": "96.54",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000768065.1",
                "gtdb_species": "s__Aquabacterium sp000768065",
                "ani": 78.4028,
                "matched_fragments": 248,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.079,
        "cell_length": 0.204,
        "doubling_h": null,
        "growth_tmp": 30.5,
        "optimum_tmp": 32.5,
        "optimum_ph": null,
        "genome_size": 7167090.5,
        "gc_content": 68.981,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__RFTU01",
        "s__RFTU01 sp945878385"
    ],
    "_genome_taxon": [
        "Azohydromonas",
        "lata",
        "NBRC",
        "102462",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__RFTU01",
        "s__RFTU01 sp945878385",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "RFTU01",
        "RFTU01",
        "sp945878385"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}