{ "type": "genome", "identifier": "GCA_945878655.1", "organism": "Polynucleobacter meluiroseus", "title": "Polynucleobacter meluiroseus", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945878655.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110380347", "wgs_master": "CAMDWU000000000.1", "refseq_category": "na", "taxid": "1938814", "species_taxid": "1938814", "organism_name": "Polynucleobacter meluiroseus", "infraspecific_name": "", "isolate": "TE-11nov19-243", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "TE-11nov19-243", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/878/655/GCA_945878655.1_TE-11nov19-243", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Polynucleobacter meluiroseus" ], "sample_taxid": [ "1938814" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.677 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence 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"below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903871735.1", "gtdb_species": "s__Polynucleobacter sp903871735", "ani": 96.0037, "matched_fragments": 663, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "inconclusive" }, { "accession": "GCA_009927445.1", "gtdb_species": "s__Polynucleobacter sp009927445", "ani": 95.2301, "matched_fragments": 660, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", 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"min_intra_species_ani": "99.49", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903821995.1", "gtdb_species": "s__Polynucleobacter sp903821995", "ani": 76.3935, "matched_fragments": 51, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "99.77", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 9, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.45, "cell_length": -0.029, "doubling_h": null, "growth_tmp": 25.5, "optimum_tmp": 20.0, "optimum_ph": 6.2, "genome_size": 1985362.708, "gc_content": 46.363, "coding_genes": 1918.652, "rRNA16S_genes": 1.0, "tRNA_genes": 37.981, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, 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"MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }