{
    "type": "genome",
    "identifier": "GCA_945886445.1",
    "organism": "Bifidobacterium breve",
    "title": "Bifidobacterium breve",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945886445.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110379634",
        "wgs_master": "CAMCZG000000000.1",
        "refseq_category": "na",
        "taxid": "1685",
        "species_taxid": "1685",
        "organism_name": "Bifidobacterium breve",
        "infraspecific_name": "",
        "isolate": "ME-08apr19-267",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "ME-08apr19-267",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/886/445/GCA_945886445.1_ME-08apr19-267",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium breve"
        ],
        "sample_taxid": [
            "1685"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "0.612 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.75,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2136168",
        "Number of Sequences": "105",
        "Longest Sequences (bp)": "130530",
        "N50 (bp)": "28706",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.5",
        "Number of CDSs": "2049",
        "Average Protein Length": "310.7",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 93.75,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013205145.1",
                "gtdb_species": "s__F1-20-MAGs119 sp013205145",
                "ani": 91.799,
                "matched_fragments": 432,
                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__F1-20-MAGs119",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.62",
                "min_intra_species_ani": "96.62",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903858075.1",
                "gtdb_species": "s__F1-20-MAGs119 sp903858075",
                "ani": 91.1791,
                "matched_fragments": 369,
                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__F1-20-MAGs119",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009711295.1",
                "gtdb_species": "s__F1-20-MAGs119 sp009711295",
                "ani": 86.3243,
                "matched_fragments": 471,
                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__F1-20-MAGs119",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903904615.1",
                "gtdb_species": "s__UBA2093 sp903904615",
                "ani": 78.0918,
                "matched_fragments": 51,
                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__UBA2093",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018970175.1",
                "gtdb_species": "s__F1-20-MAGs119 sp018970175",
                "ani": 76.7594,
                "matched_fragments": 59,
                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__F1-20-MAGs119",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009703055.1",
                "gtdb_species": "s__UBA2093 sp009703055",
                "ani": 75.8402,
                "matched_fragments": 50,
                "total_fragments": 666,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__UBA2093",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.022,
        "cell_length": 0.328,
        "doubling_h": 0.178,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.377,
        "genome_size": 2374244.56,
        "gc_content": 58.777,
        "coding_genes": 1891.625,
        "rRNA16S_genes": 2.385,
        "tRNA_genes": 54.231,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
        "f__Ilumatobacteraceae",
        "g__F1-20-MAGs119",
        "s__F1-20-MAGs119 sp945886445"
    ],
    "_genome_taxon": [
        "Bifidobacterium",
        "breve",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
        "f__Ilumatobacteraceae",
        "g__F1-20-MAGs119",
        "s__F1-20-MAGs119 sp945886445",
        "Bacteria",
        "Actinomycetota",
        "Acidimicrobiia",
        "Acidimicrobiales",
        "Ilumatobacteraceae",
        "F1-20-MAGs119",
        "F1-20-MAGs119",
        "sp945886445"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}