{ "type": "genome", "identifier": "GCA_945888725.1", "organism": "Methylobacterium symbioticum", "title": "Methylobacterium symbioticum", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945888725.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110379714", "wgs_master": "CAMDAP000000000.1", "refseq_category": "na", "taxid": "2584084", "species_taxid": "2584084", "organism_name": "Methylobacterium symbioticum", "infraspecific_name": "", "isolate": "MH-08apr19-112", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "MH-08apr19-112", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/888/725/GCA_945888725.1_MH-08apr19-112", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium symbioticum" ], "sample_taxid": [ "2584084" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "1.502 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5512369", "Number of Sequences": "167", "Longest Sequences (bp)": "160325", "N50 (bp)": "51107", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.4", "Number of CDSs": "5164", "Average Protein Length": "299.1", "Coding Ratio (%)": "84.1", "Number of rRNAs": "4", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium gregans", "strain": "strain=NBRC 103626", "accession": "GCA_022179245.1", "taxid": 374424, "species_taxid": 374424, "relation_to_type": "type", "validated": true, "ani": 98.6781, "matched_fragments": 1499, "total_fragments": 1763, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 91.0099, "matched_fragments": 1366, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium radiodurans", "strain": "strain=17Sr1-43", "accession": "GCA_003173735.1", "taxid": 2202828, "species_taxid": 2202828, "relation_to_type": "type", "validated": true, "ani": 90.4988, "matched_fragments": 1339, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=DSM 22415", "accession": "GCA_022179165.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 86.0154, "matched_fragments": 1141, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=SW08-7", "accession": "GCA_902141855.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 85.9967, "matched_fragments": 1187, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium symbioticum", "strain": "strain=SB0023/3", "accession": "GCA_902141845.1", "taxid": 2584084, "species_taxid": 2584084, "relation_to_type": "type", "validated": true, "ani": 85.5962, "matched_fragments": 1127, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oxalidis", "strain": "strain=DSM 24028", "accession": "GCA_022179505.1", "taxid": 944322, "species_taxid": 944322, "relation_to_type": "type", "validated": true, "ani": 83.3984, "matched_fragments": 985, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tardum", "strain": "strain=NBRC 103632", "accession": "GCA_022179585.1", "taxid": 374432, "species_taxid": 374432, "relation_to_type": "type", "validated": true, "ani": 82.5037, "matched_fragments": 1063, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium 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