{
    "type": "genome",
    "identifier": "GCA_945889475.1",
    "organism": "Bifidobacterium breve",
    "title": "Bifidobacterium breve",
    "description": "derived from metagenome; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945889475.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110379603",
        "wgs_master": "CAMDBT000000000.1",
        "refseq_category": "na",
        "taxid": "1685",
        "species_taxid": "1685",
        "organism_name": "Bifidobacterium breve",
        "infraspecific_name": "",
        "isolate": "MaH-09apr19-213",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "MaH-09apr19-213",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/889/475/GCA_945889475.1_MaH-09apr19-213",
        "excluded_from_refseq": "derived from metagenome; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium breve"
        ],
        "sample_taxid": [
            "1685"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy"
        ],
        "sample_host_location_id": [],
        "data_size": "0.459 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 84.47,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1649801",
        "Number of Sequences": "39",
        "Longest Sequences (bp)": "172181",
        "N50 (bp)": "63613",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.7",
        "Number of CDSs": "1572",
        "Average Protein Length": "324.4",
        "Coding Ratio (%)": "92.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Capillimicrobium parvum",
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                "accession": "GCA_021172045.1",
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                "species_taxid": 2884022,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Conexibacter arvalis",
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                "accession": "GCA_014199525.1",
                "taxid": 912552,
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                "status": "below_threshold"
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                "organism_name": "Baekduia soli",
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                "species_taxid": 496014,
                "relation_to_type": "type",
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                "ani": 76.7991,
                "matched_fragments": 140,
                "total_fragments": 532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Conexibacter woesei",
                "strain": "strain=DSM 14684",
                "accession": "GCA_000025265.1",
                "taxid": 191495,
                "species_taxid": 191495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7727,
                "matched_fragments": 183,
                "total_fragments": 532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter medicamentivorans",
                "strain": "strain=I11",
                "accession": "GCA_000240225.2",
                "taxid": 1097667,
                "species_taxid": 1097667,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5275,
                "matched_fragments": 150,
                "total_fragments": 532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solirubrobacter pauli",
                "strain": "strain=DSM 14954",
                "accession": "GCA_003633755.1",
                "taxid": 166793,
                "species_taxid": 166793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2947,
                "matched_fragments": 124,
                "total_fragments": 532,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter americanus",
                "strain": "strain=DSM 16676",
                "accession": "GCA_000420025.1",
                "taxid": 588672,
                "species_taxid": 588672,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1221,
                "matched_fragments": 90,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter minatonensis",
                "strain": "strain=DSM 18081",
                "accession": "GCA_000519325.1",
                "taxid": 298163,
                "species_taxid": 298163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0512,
                "matched_fragments": 106,
                "total_fragments": 532,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 84.47,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCA_903959665.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__F1-60-MAGs163",
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                "min_intra_species_ani": "99.00",
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                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCA_016462245.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__F1-60-MAGs163",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005798685.1",
                "gtdb_species": "s__F1-60-MAGs163 sp005798685",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__F1-60-MAGs163",
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                "min_intra_species_ani": "99.84",
                "mean_intra_species_af": "0.96",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903953065.1",
                "gtdb_species": "s__F1-60-MAGs163 sp903953065",
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                "matched_fragments": 201,
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            },
            {
                "accession": "GCA_009699615.1",
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                "mean_intra_species_ani": "N/A",
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            },
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                "accession": "GCA_903821395.1",
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            },
            {
                "accession": "GCA_017882425.1",
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            },
            {
                "accession": "GCA_016462625.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.022,
        "cell_length": 0.328,
        "doubling_h": 0.178,
        "growth_tmp": 37.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "f__Solirubrobacteraceae",
        "g__F1-60-MAGs163",
        "s__F1-60-MAGs163 sp945889475"
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    "_genome_taxon": [
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        "d__Bacteria",
        "p__Actinomycetota",
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        "f__Solirubrobacteraceae",
        "g__F1-60-MAGs163",
        "s__F1-60-MAGs163 sp945889475",
        "Bacteria",
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        "Thermoleophilia",
        "Solirubrobacterales",
        "Solirubrobacteraceae",
        "F1-60-MAGs163",
        "F1-60-MAGs163",
        "sp945889475"
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    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}