{
    "type": "genome",
    "identifier": "GCA_945889545.1",
    "organism": "Bifidobacterium breve",
    "title": "Bifidobacterium breve",
    "description": "derived from metagenome; genome length too large",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945889545.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110379589",
        "wgs_master": "CAMDCC000000000.1",
        "refseq_category": "na",
        "taxid": "1685",
        "species_taxid": "1685",
        "organism_name": "Bifidobacterium breve",
        "infraspecific_name": "",
        "isolate": "MaH-09apr19-113",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "MaH-09apr19-113",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/889/545/GCA_945889545.1_MaH-09apr19-113",
        "excluded_from_refseq": "derived from metagenome; genome length too large",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bifidobacterium breve"
        ],
        "sample_taxid": [
            "1685"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Italy"
        ],
        "sample_host_location_id": [],
        "data_size": "0.783 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.07,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2844522",
        "Number of Sequences": "341",
        "Longest Sequences (bp)": "38987",
        "N50 (bp)": "9672",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.8",
        "Number of CDSs": "2601",
        "Average Protein Length": "296.6",
        "Coding Ratio (%)": "81.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rhabdothermincola salaria",
                "strain": "strain=EGI L10124",
                "accession": "GCA_021246445.1",
                "taxid": 2903142,
                "species_taxid": 2903142,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5027,
                "matched_fragments": 111,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomarinicola tropica",
                "strain": "strain=SCSIO 58843",
                "accession": "GCA_009650215.1",
                "taxid": 2789776,
                "species_taxid": 2789776,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3071,
                "matched_fragments": 107,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desertimonas flava",
                "strain": "strain=SYSU D60003",
                "accession": "GCA_003426815.1",
                "taxid": 2064846,
                "species_taxid": 2064846,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1101,
                "matched_fragments": 110,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhabdothermincola sediminis",
                "strain": "strain=SYSU G02662",
                "accession": "GCA_014805525.1",
                "taxid": 2751370,
                "species_taxid": 2751370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1095,
                "matched_fragments": 101,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ilumatobacter fluminis",
                "strain": "strain=DSM 18936",
                "accession": "GCA_004364865.1",
                "taxid": 467091,
                "species_taxid": 467091,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8038,
                "matched_fragments": 90,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia wutianyii",
                "strain": "strain=Z294",
                "accession": "GCA_006349365.1",
                "taxid": 2585135,
                "species_taxid": 2585135,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5602,
                "matched_fragments": 55,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ilumatobacter nonamiensis",
                "strain": "strain=YM16-303",
                "accession": "GCA_000350145.1",
                "taxid": 467093,
                "species_taxid": 467093,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.496,
                "matched_fragments": 68,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanitalea stevensii",
                "strain": "strain=Sa1BUA1",
                "accession": "GCA_014837105.1",
                "taxid": 2763072,
                "species_taxid": 2763072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3287,
                "matched_fragments": 61,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dactylosporangium fulvum",
                "strain": "strain=NRRL B-16292",
                "accession": "GCA_025137375.1",
                "taxid": 53359,
                "species_taxid": 53359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2335,
                "matched_fragments": 107,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glycomyces sambucus",
                "strain": "strain=CGMCC 4.3147",
                "accession": "GCA_900102815.1",
                "taxid": 380244,
                "species_taxid": 380244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2218,
                "matched_fragments": 74,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardiopsis salina",
                "strain": "strain=YIM 90010",
                "accession": "GCA_000341025.1",
                "taxid": 245836,
                "species_taxid": 245836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1967,
                "matched_fragments": 50,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraconexibacter algicola",
                "strain": "strain=Seoho-28",
                "accession": "GCA_003044185.1",
                "taxid": 2133960,
                "species_taxid": 2133960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0048,
                "matched_fragments": 69,
                "total_fragments": 795,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.07,
            "contamination": 0.46,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_009694295.1",
                "gtdb_species": "s__SHVJ01 sp009694295",
                "ani": 86.267,
                "matched_fragments": 436,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__IMCC26256;f__PALSA-555;g__SHVJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016870355.1",
                "gtdb_species": "s__SHVJ01 sp016870355",
                "ani": 79.6252,
                "matched_fragments": 413,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__IMCC26256;f__PALSA-555;g__SHVJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003140175.1",
                "gtdb_species": "s__PALSA-555 sp003140175",
                "ani": 77.6394,
                "matched_fragments": 226,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__IMCC26256;f__PALSA-555;g__PALSA-555",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016870595.1",
                "gtdb_species": "s__CAIUKV01 sp016870595",
                "ani": 77.5802,
                "matched_fragments": 190,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__IMCC26256;f__PALSA-555;g__CAIUKV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903899845.1",
                "gtdb_species": "s__CAIUKV01 sp903899845",
                "ani": 77.5451,
                "matched_fragments": 179,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__IMCC26256;f__PALSA-555;g__CAIUKV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.48",
                "min_intra_species_ani": "99.41",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_016870245.1",
                "gtdb_species": "s__CAIUKV01 sp016870245",
                "ani": 77.5375,
                "matched_fragments": 241,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__IMCC26256;f__PALSA-555;g__CAIUKV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013695115.1",
                "gtdb_species": "s__JACDBD01 sp013695115",
                "ani": 77.425,
                "matched_fragments": 186,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__IMCC26256;f__PALSA-555;g__JACDBD01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017882925.1",
                "gtdb_species": "s__Chersky-534 sp017882925",
                "ani": 77.3869,
                "matched_fragments": 186,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__IMCC26256;f__Chersky-534;g__Chersky-534",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017853455.1",
                "gtdb_species": "s__CAIUKV01 sp017853455",
                "ani": 77.3165,
                "matched_fragments": 153,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__IMCC26256;f__PALSA-555;g__CAIUKV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003134555.1",
                "gtdb_species": "s__PALSA-610 sp003134555",
                "ani": 76.7865,
                "matched_fragments": 166,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__IMCC26256;f__PALSA-610;g__PALSA-610",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016179865.1",
                "gtdb_species": "s__JACPCJ01 sp016179865",
                "ani": 76.4957,
                "matched_fragments": 71,
                "total_fragments": 795,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__IMCC26256;f__JACPCJ01;g__JACPCJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.022,
        "cell_length": 0.328,
        "doubling_h": 0.178,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.377,
        "genome_size": 2374244.56,
        "gc_content": 58.777,
        "coding_genes": 1891.625,
        "rRNA16S_genes": 2.385,
        "tRNA_genes": 54.231,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__IMCC26256",
        "f__PALSA-555",
        "g__SHVJ01",
        "s__SHVJ01 sp945889545"
    ],
    "_genome_taxon": [
        "Bifidobacterium",
        "breve",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__IMCC26256",
        "f__PALSA-555",
        "g__SHVJ01",
        "s__SHVJ01 sp945889545",
        "Bacteria",
        "Actinomycetota",
        "Acidimicrobiia",
        "IMCC26256",
        "PALSA-555",
        "SHVJ01",
        "SHVJ01",
        "sp945889545"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}