{ "type": "genome", "identifier": "GCA_945890635.1", "organism": "Rhodoferax sp. OV413", "title": "Rhodoferax sp. OV413", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945890635.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110379882", "wgs_master": "CAMDCT000000000.1", "refseq_category": "na", "taxid": "1855285", "species_taxid": "1855285", "organism_name": "Rhodoferax sp. OV413", "infraspecific_name": "", "isolate": "MiE-16apr19-283", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "MiE-16apr19-283", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/890/635/GCA_945890635.1_MiE-16apr19-283", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodoferax sp. OV413" ], "sample_taxid": [ "1855285" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.865 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 44.89, "contamination": 0.52, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3079030", "Number of Sequences": "453", "Longest Sequences (bp)": "30688", "N50 (bp)": "7573", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.0", "Number of CDSs": "2570", "Average Protein Length": "304.9", "Coding Ratio (%)": "76.4", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodoferax ferrireducens", "strain": "strain=DSM 15236", 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