{
    "type": "genome",
    "identifier": "GCA_945892265.1",
    "organism": "Akkermansia muciniphila",
    "title": "Akkermansia muciniphila",
    "description": "derived from metagenome; genome length too large",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945892265.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110379823",
        "wgs_master": "CAMDDN000000000.1",
        "refseq_category": "na",
        "taxid": "239935",
        "species_taxid": "239935",
        "organism_name": "Akkermansia muciniphila",
        "infraspecific_name": "",
        "isolate": "MiE-14oct19-101",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "MiE-14oct19-101",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/892/265/GCA_945892265.1_MiE-14oct19-101",
        "excluded_from_refseq": "derived from metagenome; genome length too large",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Akkermansia muciniphila"
        ],
        "sample_taxid": [
            "239935"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "1.233 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4377205",
        "Number of Sequences": "205",
        "Longest Sequences (bp)": "103693",
        "N50 (bp)": "34535",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.7",
        "Number of CDSs": "3432",
        "Average Protein Length": "361.6",
        "Coding Ratio (%)": "85.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "species_taxid": 1144680,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferula rosea",
                "strain": "strain=KCTC 22201",
                "accession": "GCA_016595525.1",
                "taxid": 490093,
                "species_taxid": 490093,
                "relation_to_type": "type",
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            },
            {
                "organism_name": "Luteolibacter ambystomatis",
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                "taxid": 2824561,
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                "relation_to_type": "type",
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                "matched_fragments": 81,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteolibacter luteus",
                "strain": "strain=G-1-1-1",
                "accession": "GCA_012913485.1",
                "taxid": 2728835,
                "species_taxid": 2728835,
                "relation_to_type": "type",
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                "matched_fragments": 67,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevifollis gellanilyticus",
                "strain": "strain=NBRC 108608",
                "accession": "GCA_007992435.1",
                "taxid": 748831,
                "species_taxid": 748831,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6514,
                "matched_fragments": 69,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Trebonia kvetii",
                "strain": "strain=15TR583",
                "accession": "GCA_007827045.1",
                "taxid": 2480626,
                "species_taxid": 2480626,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6913,
                "matched_fragments": 53,
                "total_fragments": 1361,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCA_002288445.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__DEV007;g__Arctic95D-9",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
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            {
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_002344525.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_007123695.1",
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            },
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
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        "gc_content": 55.767,
        "coding_genes": 2234.25,
        "rRNA16S_genes": 3.0,
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        "gram_stain": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 1.0,
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    "_gtdb_taxon": [
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    "_genome_taxon": [
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        "d__Bacteria",
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        "c__Verrucomicrobiae",
        "o__Verrucomicrobiales",
        "f__DEV007",
        "g__Arctic95D-9",
        "s__Arctic95D-9 sp002288445",
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        "Verrucomicrobiales",
        "DEV007",
        "Arctic95D-9",
        "Arctic95D-9",
        "sp002288445"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}