{ "type": "genome", "identifier": "GCA_945892755.1", "organism": "Rhizobium sp. Q54", "title": "Rhizobium sp. Q54", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945892755.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110379570", "wgs_master": "CAMDDO000000000.1", "refseq_category": "na", "taxid": "1335060", "species_taxid": "1335060", "organism_name": "Rhizobium sp. Q54", "infraspecific_name": "", "isolate": "MaH-04nov19-276", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "MaH-04nov19-276", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/892/755/GCA_945892755.1_MaH-04nov19-276", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhizobium sp. Q54" ], "sample_taxid": [ "1335060" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy" ], "sample_host_location_id": [], "data_size": "0.907 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 68.98, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3269857", "Number of Sequences": "117", "Longest Sequences (bp)": "129391", "N50 (bp)": "38343", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.5", "Number of CDSs": "3039", "Average Protein Length": "319.9", "Coding Ratio (%)": "89.2", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hypericibacter adhaerens", "strain": "strain=R5959", "accession": "GCA_008728835.1", "taxid": 2602016, "species_taxid": 2602016, "relation_to_type": "type", "validated": true, "ani": 76.6121, "matched_fragments": 219, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dongia mobilis", "strain": "strain=CGMCC 1.7660", "accession": "GCA_004363235.1", "taxid": 578943, "species_taxid": 578943, "relation_to_type": "type", "validated": true, "ani": 76.5968, "matched_fragments": 133, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum pacificum", "strain": "strain=MCCC 1A02656", "accession": "GCA_001618175.1", "taxid": 580166, "species_taxid": 580166, "relation_to_type": "type", "validated": true, "ani": 76.352, "matched_fragments": 120, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidongia dinghuensis", "strain": "strain=CGMCC 1.15725", "accession": "GCA_014643535.1", "taxid": 1867774, 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true, "ani": 76.143, "matched_fragments": 150, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes piscinae", "strain": "strain=DSM 19946", "accession": "GCA_003258855.1", "taxid": 444923, "species_taxid": 444923, "relation_to_type": "type", "validated": true, "ani": 76.1127, "matched_fragments": 132, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium muleiense", "strain": "strain=CGMCC 1.11022", "accession": "GCA_900099905.1", "taxid": 1004279, "species_taxid": 1004279, "relation_to_type": "type", "validated": true, "ani": 76.0988, "matched_fragments": 127, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium atlanticum", "strain": "strain=CNPSo 3140", "accession": "GCA_003289965.1", "taxid": 2233532, "species_taxid": 2233532, "relation_to_type": "type", "validated": true, "ani": 76.0816, "matched_fragments": 132, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum soli", "strain": "strain=CC-LY788", "accession": "GCA_017876165.1", "taxid": 1304799, "species_taxid": 1304799, "relation_to_type": "type", "validated": true, "ani": 76.0591, "matched_fragments": 132, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospirillum parvum", "strain": "strain=930I", "accession": "GCA_900100455.1", "taxid": 83401, "species_taxid": 83401, "relation_to_type": "type", "validated": true, "ani": 76.0414, "matched_fragments": 109, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea thiooxidans", "strain": "strain=DSM 9653", "accession": "GCA_900168195.1", "taxid": 53254, "species_taxid": 53254, "relation_to_type": "type", "validated": true, "ani": 76.0369, "matched_fragments": 156, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium guangdongense", "strain": "strain=CCBAU 51649", "accession": "GCA_004114975.1", "taxid": 1325090, "species_taxid": 1325090, "relation_to_type": "type", "validated": true, "ani": 76.0365, "matched_fragments": 144, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylosinus sporium", "strain": "strain=DSM 17706", "accession": "GCA_003113265.1", "taxid": 428, "species_taxid": 428, "relation_to_type": "type", "validated": true, "ani": 76.0341, "matched_fragments": 102, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 76.019, "matched_fragments": 184, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium 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"GCA_011317485.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 75.9554, "matched_fragments": 154, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 75.923, "matched_fragments": 229, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum gryphiswaldense", "strain": "strain=MSR-1", "accession": "GCA_002995515.1", "taxid": 55518, "species_taxid": 55518, "relation_to_type": "type", "validated": true, "ani": 75.8964, "matched_fragments": 91, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 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75.8638, "matched_fragments": 157, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibaculum baratangense", "strain": "strain=AMV1", "accession": "GCA_000496075.1", "taxid": 1358440, "species_taxid": 1358440, "relation_to_type": "type", "validated": true, "ani": 75.8611, "matched_fragments": 106, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovibrio salinarum", "strain": "strain=DSM 9154", "accession": "GCA_016583505.1", "taxid": 1087, "species_taxid": 1087, "relation_to_type": "type", "validated": true, "ani": 75.8579, "matched_fragments": 97, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylocella silvestris", "strain": "strain=BL2", "accession": "GCA_000021745.1", "taxid": 199596, "species_taxid": 199596, "relation_to_type": "type", "validated": true, "ani": 75.8405, "matched_fragments": 90, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovibrio salinarum", "strain": "strain=DSM 9154", "accession": "GCA_000515255.1", "taxid": 1087, "species_taxid": 1087, "relation_to_type": "type", "validated": true, "ani": 75.8332, "matched_fragments": 99, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas yunnanensis", "strain": "strain=YIM 3", "accession": "GCA_019898765.1", "taxid": 310400, "species_taxid": 310400, "relation_to_type": "type", "validated": true, "ani": 75.8178, "matched_fragments": 125, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum doebereinerae", "strain": "strain=GSF71", "accession": "GCA_003989665.1", "taxid": 92933, "species_taxid": 92933, "relation_to_type": "type", "validated": true, "ani": 75.8132, "matched_fragments": 146, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { 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