{
    "type": "genome",
    "identifier": "GCA_945897075.1",
    "organism": "Litorilinea aerophila",
    "title": "Litorilinea aerophila",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945897075.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110380393",
        "wgs_master": "CAMDEX000000000.1",
        "refseq_category": "na",
        "taxid": "1204385",
        "species_taxid": "1204385",
        "organism_name": "Litorilinea aerophila",
        "infraspecific_name": "",
        "isolate": "TH-08apr19-264",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "TH-08apr19-264",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/897/075/GCA_945897075.1_TH-08apr19-264",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Litorilinea aerophila"
        ],
        "sample_taxid": [
            "1204385"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "1.803 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.37,
        "contamination": 3.41,
        "strain_heterogeneity": 55.56,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "6379960",
        "Number of Sequences": "397",
        "Longest Sequences (bp)": "86405",
        "N50 (bp)": "21646",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.4",
        "Number of CDSs": "5414",
        "Average Protein Length": "330.7",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Litorilinea aerophila",
                "strain": "strain=ATCC BAA-2444",
                "accession": "GCA_006569185.2",
                "taxid": 1204385,
                "species_taxid": 1204385,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.068,
                "matched_fragments": 209,
                "total_fragments": 1925,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora purpureochromogenes",
                "strain": "strain=DSM 43821",
                "accession": "GCA_900091515.1",
                "taxid": 47872,
                "species_taxid": 47872,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7367,
                "matched_fragments": 51,
                "total_fragments": 1925,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora echinaurantiaca",
                "strain": "strain=DSM 43904",
                "accession": "GCA_900090235.1",
                "taxid": 47857,
                "species_taxid": 47857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7129,
                "matched_fragments": 58,
                "total_fragments": 1925,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.37,
            "contamination": 3.41,
            "strain_heterogeneity": 55.56
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        "gtdb_result": [
            {
                "accession": "GCA_016199425.1",
                "gtdb_species": "s__JACQGT01 sp016199425",
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                "matched_fragments": 719,
                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__JACQGT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018003515.1",
                "gtdb_species": "s__JAGNDO01 sp018003515",
                "ani": 76.6461,
                "matched_fragments": 259,
                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__JAGNDO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_015494005.1",
                "gtdb_species": "s__S144-5 sp015494005",
                "ani": 76.1378,
                "matched_fragments": 156,
                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__S144-5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016124945.1",
                "gtdb_species": "s__RI-153 sp016124945",
                "ani": 76.0994,
                "matched_fragments": 250,
                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__RI-153",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006569185.1",
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                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Litorilinea",
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                "mean_intra_species_af": "0.99",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_014879855.1",
                "gtdb_species": "s__Caldilinea sp014879855",
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                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009841235.1",
                "gtdb_species": "s__Bin5 sp009841235",
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                "matched_fragments": 122,
                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Bin5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.53",
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                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009840225.1",
                "gtdb_species": "s__Bin5 sp009840225",
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                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Bin5",
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                "min_intra_species_ani": "95.35",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903858085.1",
                "gtdb_species": "s__Caldilinea sp903858085",
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                "matched_fragments": 92,
                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
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                "mean_intra_species_ani": "99.57",
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                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_011523365.1",
                "gtdb_species": "s__Bin5 sp011523365",
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                "matched_fragments": 119,
                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Bin5",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002391565.1",
                "gtdb_species": "s__Caldilinea sp002391565",
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                "matched_fragments": 111,
                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.77",
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                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003577005.1",
                "gtdb_species": "s__CFX5 sp003577005",
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                "matched_fragments": 169,
                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__CFX5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_003451595.1",
                "gtdb_species": "s__Caldilinea sp003451595",
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                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
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                "mean_intra_species_ani": "99.85",
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                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_903879975.1",
                "gtdb_species": "s__Caldilinea sp903879975",
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            },
            {
                "accession": "GCA_016710365.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_013360575.1",
                "gtdb_species": "s__JABWBG01 sp013360575",
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                "total_fragments": 1925,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__J102;f__J102;g__JABWBG01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_017999235.1",
                "gtdb_species": "s__SpSt-583 sp017999235",
                "ani": 74.9309,
                "matched_fragments": 58,
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                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__UBA6663;g__SpSt-583",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": null,
        "doubling_h": 0.698,
        "growth_tmp": 54.0,
        "optimum_tmp": 55.0,
        "optimum_ph": 7.0,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Chloroflexota",
        "c__Anaerolineae",
        "o__Caldilineales",
        "f__Caldilineaceae",
        "g__JACQGT01",
        "s__JACQGT01 sp945897075"
    ],
    "_genome_taxon": [
        "Litorilinea",
        "aerophila",
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Anaerolineae",
        "o__Caldilineales",
        "f__Caldilineaceae",
        "g__JACQGT01",
        "s__JACQGT01 sp945897075",
        "Bacteria",
        "Chloroflexota",
        "Anaerolineae",
        "Caldilineales",
        "Caldilineaceae",
        "JACQGT01",
        "JACQGT01",
        "sp945897075"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}