{ "type": "genome", "identifier": "GCA_945897375.1", "organism": "Akkermansia muciniphila", "title": "Akkermansia muciniphila", "description": "derived from metagenome; genome length too large", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945897375.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110380078", "wgs_master": "CAMDFH000000000.1", "refseq_category": "na", "taxid": "239935", "species_taxid": "239935", "organism_name": "Akkermansia muciniphila", "infraspecific_name": "", "isolate": "MoE-23oct19-335", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "MoE-23oct19-335", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/897/375/GCA_945897375.1_MoE-23oct19-335", "excluded_from_refseq": "derived from metagenome; genome length too large", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Akkermansia muciniphila" ], "sample_taxid": [ "239935" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria" ], "sample_host_location_id": [], "data_size": "1.428 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5055657", "Number of Sequences": "399", "Longest Sequences (bp)": "108604", "N50 (bp)": "16864", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.8", "Number of CDSs": "3925", "Average Protein Length": "339.3", "Coding Ratio (%)": "79.0", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prosthecobacter vanneervenii", "strain": "strain=DSM 12252", "accession": "GCA_014203095.1", "taxid": 48466, "species_taxid": 48466, "relation_to_type": "type", "validated": true, "ani": 79.265, "matched_fragments": 740, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevifollis gellanilyticus", "strain": "strain=NBRC 108608", "accession": "GCA_007992435.1", "taxid": 748831, "species_taxid": 748831, "relation_to_type": "type", "validated": true, "ani": 77.7868, "matched_fragments": 453, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter debontii", "strain": "strain=ATCC 700200", "accession": "GCA_900167535.1", "taxid": 48467, "species_taxid": 48467, "relation_to_type": "type", "validated": true, "ani": 77.3315, "matched_fragments": 218, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter fusiformis", "strain": "strain=ATCC 25309", "accession": "GCA_004364345.1", "taxid": 48464, "species_taxid": 48464, "relation_to_type": "type", "validated": true, "ani": 77.229, "matched_fragments": 222, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter dejongeii", "strain": "strain=DSM 12251", "accession": "GCA_014203045.1", "taxid": 48465, "species_taxid": 48465, "relation_to_type": "type", "validated": true, "ani": 77.0763, "matched_fragments": 225, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phragmitibacter flavus", "strain": "strain=MG-N-17", "accession": "GCA_005780165.1", "taxid": 2576071, "species_taxid": 2576071, "relation_to_type": "type", "validated": true, "ani": 76.9107, "matched_fragments": 109, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=DSM 4136", "accession": "GCA_000172155.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 76.5906, "matched_fragments": 152, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=JCM 18804", "accession": "GCA_001313125.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 76.583, "matched_fragments": 146, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter ambystomatis", "strain": "strain=32A", "accession": "GCA_018137965.1", "taxid": 2824561, "species_taxid": 2824561, "relation_to_type": "type", "validated": true, "ani": 76.2175, "matched_fragments": 100, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003506995.1", "gtdb_species": "s__Prosthecobacter sp003506995", "ani": 86.115, "matched_fragments": 930, "total_fragments": 1491, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Verrucomicrobiaceae;g__Prosthecobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014879935.1", "gtdb_species": "s__Prosthecobacter sp014879935", "ani": 81.695, "matched_fragments": 941, 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