{ "type": "genome", "identifier": "GCA_945897535.1", "organism": "uncultured bacterium", "title": "uncultured bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945897535.1", "bioproject": "PRJEB52946", "biosample": "SAMEA110405848", "wgs_master": "CAMDFM000000000.1", "refseq_category": "na", "taxid": "77133", "species_taxid": "77133", "organism_name": "uncultured bacterium", "infraspecific_name": "", "isolate": "ERR1606222_bin.10_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "ERR1606222_bin.10_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/897/535/GCA_945897535.1_ERR1606222_bin.10_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured bacterium" ], "sample_taxid": [ "77133" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.879 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3099851", "Number of Sequences": "56", "Longest Sequences (bp)": "227900", "N50 (bp)": "97730", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.6", "Number of CDSs": "2887", "Average Protein Length": "315.9", "Coding Ratio (%)": "88.3", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseburia inulinivorans", "strain": "strain=DSM 16841", "accession": "GCA_000174195.1", "taxid": 360807, "species_taxid": 360807, "relation_to_type": "suspected-type", "validated": true, "ani": 95.8495, "matched_fragments": 796, "total_fragments": 1002, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1 82", "accession": "GCA_025151715.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 79.3181, "matched_fragments": 327, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_000156535.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 79.2857, "matched_fragments": 327, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_900537995.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 79.2201, "matched_fragments": 327, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia porci", "strain": "strain=MUC/MUC-530-WT-4D", "accession": "GCA_009695765.1", "taxid": 2605790, "species_taxid": 2605790, "relation_to_type": "type", "validated": true, "ani": 78.6902, "matched_fragments": 216, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia hominis", "strain": "strain=A2-183", "accession": "GCA_000225345.1", "taxid": 301301, "species_taxid": 301301, "relation_to_type": "type", "validated": true, "ani": 78.0358, "matched_fragments": 220, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, "species_taxid": 410072, "relation_to_type": "type", "validated": true, "ani": 77.9486, "matched_fragments": 89, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyrivibrio crossotus", "strain": "strain=DSM 2876", "accession": "GCA_000156015.1", "taxid": 45851, "species_taxid": 45851, "relation_to_type": "type", "validated": true, "ani": 77.3949, "matched_fragments": 63, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyrivibrio crossotus", "strain": "strain=DSM 2876", "accession": "GCA_025148445.1", "taxid": 45851, "species_taxid": 45851, "relation_to_type": "type", "validated": true, "ani": 77.3899, "matched_fragments": 64, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia obeum", "strain": "strain=ATCC 29174", "accession": "GCA_025147765.1", "taxid": 40520, "species_taxid": 40520, "relation_to_type": "type", "validated": true, "ani": 77.2745, "matched_fragments": 94, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia lenta", "strain": "strain=NSJ-9", "accession": "GCA_014287435.1", "taxid": 2763061, "species_taxid": 2763061, "relation_to_type": "type", "validated": true, "ani": 77.2007, "matched_fragments": 106, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hominisplanchenecus faecis", "strain": "strain=CLA-AA-H246", "accession": "GCA_020687205.1", "taxid": 2885351, "species_taxid": 2885351, "relation_to_type": "type", "validated": true, "ani": 77.1273, "matched_fragments": 91, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudobutyrivibrio xylanivorans", "strain": "strain=DSM 14809", "accession": "GCA_900141825.1", "taxid": 185007, "species_taxid": 185007, "relation_to_type": "type", "validated": true, "ani": 76.9889, "matched_fragments": 51, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agathobacter ruminis", "strain": "strain=JK623", "accession": "GCA_002735305.1", "taxid": 1712665, "species_taxid": 1712665, "relation_to_type": "type", "validated": true, "ani": 76.8385, "matched_fragments": 89, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia coccoides", "strain": "strain=DSM 935", "accession": "GCA_004340925.1", "taxid": 1532, "species_taxid": 1532, "relation_to_type": "type", "validated": true, "ani": 76.4087, "matched_fragments": 65, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=DSM 2950", "accession": "GCA_000439125.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.363, "matched_fragments": 61, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=ATCC 27340", "accession": "GCA_000373885.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3354, "matched_fragments": 62, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=DSM 2950", "accession": "GCA_014131715.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3277, "matched_fragments": 59, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella tayi", "strain": "strain=DSM 26961", "accession": "GCA_001881565.1", "taxid": 1432052, "species_taxid": 1432052, "relation_to_type": "type", "validated": true, "ani": 75.9173, "matched_fragments": 52, "total_fragments": 1002, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000174195.1", "gtdb_species": "s__Roseburia inulinivorans", "ani": 95.8495, "matched_fragments": 796, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.45", "min_intra_species_ani": "95.90", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.61", "num_clustered_genomes": 28, "status": "conclusive" }, { "accession": "GCA_900542495.1", "gtdb_species": "s__Roseburia sp900542495", "ani": 89.046, "matched_fragments": 714, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.47", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.76", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_900756925.1", "gtdb_species": "s__Roseburia sp900756925", "ani": 80.2316, "matched_fragments": 215, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.83", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014287635.1", "gtdb_species": "s__1XD42-69 sp014287635", "ani": 79.2412, "matched_fragments": 167, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__1XD42-69", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "98.20", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900537995.1", "gtdb_species": "s__Roseburia intestinalis", "ani": 79.2206, "matched_fragments": 327, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.80", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCF_001940165.1", "gtdb_species": "s__Roseburia sp001940165", "ani": 79.1493, "matched_fragments": 291, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003470905.1", "gtdb_species": "s__Roseburia sp003470905", "ani": 79.116, "matched_fragments": 336, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.30", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_003483745.1", "gtdb_species": "s__Roseburia sp003483745", "ani": 78.9595, "matched_fragments": 307, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.45", "min_intra_species_ani": "97.41", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900550935.1", "gtdb_species": "s__Roseburia sp900550935", "ani": 78.7604, "matched_fragments": 244, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "98.19", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902363825.1", "gtdb_species": "s__CAG-45 sp000438375", "ani": 78.1841, "matched_fragments": 160, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-45", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "98.28", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000225345.1", "gtdb_species": "s__Roseburia hominis", "ani": 78.0307, "matched_fragments": 219, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "95.20", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_002735305.1", "gtdb_species": "s__Agathobacter ruminis", "ani": 76.8907, "matched_fragments": 88, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "97.94", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900116395.1", "gtdb_species": "s__XBD2001 sp900116395", "ani": 76.4252, "matched_fragments": 59, "total_fragments": 1002, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__XBD2001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "95.68", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 9, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Roseburia", "s__Roseburia inulinivorans" ], "_genome_taxon": [ "uncultured", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Roseburia", "s__Roseburia inulinivorans", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Roseburia", "Roseburia", "inulinivorans" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }