{
    "type": "genome",
    "identifier": "GCA_945897675.1",
    "organism": "Verrucomicrobia subdivision 6 bacterium",
    "title": "Verrucomicrobia subdivision 6 bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945897675.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110380018",
        "wgs_master": "CAMDFZ000000000.1",
        "refseq_category": "na",
        "taxid": "2053626",
        "species_taxid": "2053626",
        "organism_name": "Verrucomicrobia subdivision 6 bacterium",
        "infraspecific_name": "",
        "isolate": "MiH-22jul19-298",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "MiH-22jul19-298",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/897/675/GCA_945897675.1_MiH-22jul19-298",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Verrucomicrobia subdivision 6 bacterium"
        ],
        "sample_taxid": [
            "2053626"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "0.570 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1991068",
        "Number of Sequences": "70",
        "Longest Sequences (bp)": "124793",
        "N50 (bp)": "49393",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.0",
        "Number of CDSs": "1863",
        "Average Protein Length": "311.5",
        "Coding Ratio (%)": "87.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_903956835.1",
                "gtdb_species": "s__UBA3015 sp903956835",
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                "matched_fragments": 491,
                "total_fragments": 630,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Methylacidiphilales;f__UBA3015;g__UBA3015",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.22",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001438005.1",
                "gtdb_species": "s__UBA3015 sp001438005",
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                "matched_fragments": 133,
                "total_fragments": 630,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Methylacidiphilales;f__UBA3015;g__UBA3015",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.83",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_009927835.1",
                "gtdb_species": "s__UBA3015 sp002367435",
                "ani": 77.1958,
                "matched_fragments": 130,
                "total_fragments": 630,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Methylacidiphilales;f__UBA3015;g__UBA3015",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.08",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_010024525.1",
                "gtdb_species": "s__UBA3015 sp010024525",
                "ani": 76.6974,
                "matched_fragments": 69,
                "total_fragments": 630,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Methylacidiphilales;f__UBA3015;g__UBA3015",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010031845.1",
                "gtdb_species": "s__UBA3015 sp010031845",
                "ani": 76.5856,
                "matched_fragments": 63,
                "total_fragments": 630,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Methylacidiphilales;f__UBA3015;g__UBA3015",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016876055.1",
                "gtdb_species": "s__UBA3015 sp016876055",
                "ani": 76.3526,
                "matched_fragments": 73,
                "total_fragments": 630,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Methylacidiphilales;f__UBA3015;g__UBA3015",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002342345.1",
                "gtdb_species": "s__UBA3015 sp002342345",
                "ani": 76.1813,
                "matched_fragments": 58,
                "total_fragments": 630,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Methylacidiphilales;f__UBA3015;g__UBA3015",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.55",
                "min_intra_species_ani": "99.55",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002366885.1",
                "gtdb_species": "s__UBA3015 sp002366885",
                "ani": 76.0938,
                "matched_fragments": 73,
                "total_fragments": 630,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Methylacidiphilales;f__UBA3015;g__UBA3015",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Methylacidiphilales",
        "f__UBA3015",
        "g__UBA3015",
        "s__UBA3015 sp903956835"
    ],
    "_genome_taxon": [
        "Verrucomicrobia",
        "subdivision",
        "6",
        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Methylacidiphilales",
        "f__UBA3015",
        "g__UBA3015",
        "s__UBA3015 sp903956835",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Methylacidiphilales",
        "UBA3015",
        "UBA3015",
        "UBA3015",
        "sp903956835"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}