{ "type": "genome", "identifier": "GCA_945898085.1", "organism": "Chthoniobacter flavus", "title": "Chthoniobacter flavus", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945898085.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110380258", "wgs_master": "CAMDHF000000000.1", "refseq_category": "na", "taxid": "191863", "species_taxid": "191863", "organism_name": "Chthoniobacter flavus", "infraspecific_name": "", "isolate": "MsH-30apr19-145", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "MsH-30apr19-145", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/898/085/GCA_945898085.1_MsH-30apr19-145", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Chthoniobacter flavus" ], "sample_taxid": [ "191863" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.569 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.09, "contamination": 4.92, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1991889", "Number of Sequences": "268", "Longest Sequences (bp)": "76556", "N50 (bp)": "8737", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.4", "Number of CDSs": "1578", "Average Protein Length": "314.9", "Coding Ratio (%)": "74.8", "Number of rRNAs": "1", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 78.09, "contamination": 4.92, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_002290555.1", "gtdb_species": "s__UBA967 sp002290555", "ani": 95.6785, "matched_fragments": 331, "total_fragments": 549, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Terrimicrobiaceae;g__UBA967", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.67", "min_intra_species_ani": "99.67", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": 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143, "total_fragments": 549, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Terrimicrobiaceae;g__UBA967", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007280915.1", "gtdb_species": "s__QYQL01 sp007280915", "ani": 76.3512, "matched_fragments": 62, "total_fragments": 549, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Terrimicrobiaceae;g__QYQL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.046, "cell_length": 0.146, "doubling_h": null, "growth_tmp": 25.0, "optimum_tmp": 25.0, "optimum_ph": 5.5, "genome_size": 7848700.0, "gc_content": 61.1, "coding_genes": null, "rRNA16S_genes": 1.0, "tRNA_genes": 58.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Chthoniobacterales", "f__Terrimicrobiaceae", "g__UBA967", "s__UBA967 sp002290555" ], "_genome_taxon": [ "Chthoniobacter", "flavus", "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Chthoniobacterales", "f__Terrimicrobiaceae", "g__UBA967", "s__UBA967 sp002290555", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Chthoniobacterales", "Terrimicrobiaceae", "UBA967", "UBA967", "sp002290555" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }