{
    "type": "genome",
    "identifier": "GCA_945898515.1",
    "organism": "Candidatus Microthrix parvicella RN1",
    "title": "Candidatus Microthrix parvicella RN1",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945898515.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110380392",
        "wgs_master": "CAMDIH000000000.1",
        "refseq_category": "na",
        "taxid": "1229780",
        "species_taxid": "41950",
        "organism_name": "Candidatus Microthrix parvicella RN1",
        "infraspecific_name": "",
        "isolate": "TH-08apr19-254",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "TH-08apr19-254",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/898/515/GCA_945898515.1_TH-08apr19-254",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Microthrix parvicella RN1"
        ],
        "sample_taxid": [
            "1229780"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.644 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2304360",
        "Number of Sequences": "125",
        "Longest Sequences (bp)": "81214",
        "N50 (bp)": "30104",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.2",
        "Number of CDSs": "2199",
        "Average Protein Length": "311.0",
        "Coding Ratio (%)": "89.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_021246445.1",
                "taxid": 2903142,
                "species_taxid": 2903142,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 128,
                "total_fragments": 712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhabdothermincola sediminis",
                "strain": "strain=SYSU G02662",
                "accession": "GCA_014805525.1",
                "taxid": 2751370,
                "species_taxid": 2751370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2229,
                "matched_fragments": 112,
                "total_fragments": 712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desertimonas flava",
                "strain": "strain=SYSU D60003",
                "accession": "GCA_003426815.1",
                "taxid": 2064846,
                "species_taxid": 2064846,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7331,
                "matched_fragments": 85,
                "total_fragments": 712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides anomalus",
                "strain": "strain=HKS04",
                "accession": "GCA_011046535.1",
                "taxid": 2712223,
                "species_taxid": 2712223,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3114,
                "matched_fragments": 57,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora craterilacus",
                "strain": "strain=NA12",
                "accession": "GCA_003236315.1",
                "taxid": 1655439,
                "species_taxid": 1655439,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1308,
                "matched_fragments": 54,
                "total_fragments": 712,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_009694375.1",
                "gtdb_species": "s__VFJN01 sp009694375",
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                "matched_fragments": 637,
                "total_fragments": 712,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__VFJN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009886035.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__VFJN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016845305.1",
                "gtdb_species": "s__UBA9410 sp016845305",
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                "matched_fragments": 73,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017577565.1",
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                "matched_fragments": 133,
                "total_fragments": 712,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__ZC4RG19",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_019048865.1",
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                "matched_fragments": 145,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__Aquihabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012513855.1",
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                "matched_fragments": 108,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JAAZBK01",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_016185275.1",
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                "matched_fragments": 85,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JACPNX01",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_018401565.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8139;g__M30B73",
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            },
            {
                "accession": "GCA_017882935.1",
                "gtdb_species": "s__JADGOP01 sp017882935",
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            },
            {
                "accession": "GCA_004366205.1",
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            },
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            },
            {
                "accession": "GCA_009835395.1",
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                "matched_fragments": 69,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Bin134;g__VXNF01",
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                "num_clustered_genomes": 3,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
        "f__JACDCH01",
        "g__VFJN01",
        "s__VFJN01 sp945898515"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Microthrix",
        "parvicella",
        "RN1",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
        "f__JACDCH01",
        "g__VFJN01",
        "s__VFJN01 sp945898515",
        "Bacteria",
        "Actinomycetota",
        "Acidimicrobiia",
        "Acidimicrobiales",
        "JACDCH01",
        "VFJN01",
        "VFJN01",
        "sp945898515"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}