{ "type": "genome", "identifier": "GCA_945901405.1", "organism": "Bordetella parapertussis", "title": "Bordetella parapertussis", "description": "derived from metagenome; genome length too large", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945901405.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110380402", "wgs_master": "CAMDLH000000000.1", "refseq_category": "na", "taxid": "519", "species_taxid": "519", "organism_name": "Bordetella parapertussis", "infraspecific_name": "", "isolate": "TH-11nov19-107", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "TH-11nov19-107", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/901/405/GCA_945901405.1_TH-11nov19-107", "excluded_from_refseq": "derived from metagenome; genome length too large", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Bordetella parapertussis" ], "sample_taxid": [ "519" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "1.807 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6430953", "Number of Sequences": "327", "Longest Sequences (bp)": "103987", "N50 (bp)": "26644", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.4", "Number of CDSs": "6228", "Average Protein Length": "300.0", "Coding Ratio (%)": "87.1", "Number of rRNAs": "0", "Number of tRNAs": "61", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thiobacillus denitrificans", "strain": "strain=DSM 12475", "accession": "GCA_000376425.1", "taxid": 36861, "species_taxid": 36861, "relation_to_type": "type", "validated": true, "ani": 76.2993, "matched_fragments": 124, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus purpureus", "strain": "strain=DSM 168", "accession": "GCA_016653115.1", "taxid": 1067, "species_taxid": 1067, "relation_to_type": "type", "validated": true, "ani": 76.188, "matched_fragments": 120, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimicrobium lacus", "strain": "strain=skT11", "accession": "GCA_011764585.1", "taxid": 2715678, "species_taxid": 2715678, "relation_to_type": "type", "validated": true, "ani": 76.1098, "matched_fragments": 103, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgfuchsia toluolica", "strain": "strain=G5G6", "accession": "GCA_907163265.1", "taxid": 424218, "species_taxid": 424218, "relation_to_type": "type", "validated": true, "ani": 76.1017, "matched_fragments": 101, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 76.0692, "matched_fragments": 134, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Formivibrio citricus", "strain": "strain=DSM 6150", "accession": "GCA_900115065.1", "taxid": 83765, "species_taxid": 83765, "relation_to_type": "type", "validated": true, "ani": 76.0309, "matched_fragments": 71, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 76.0176, "matched_fragments": 162, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrigenium kumadai", "strain": "strain=An22", "accession": "GCA_018324385.1", "taxid": 1682490, "species_taxid": 1682490, "relation_to_type": "type", "validated": true, "ani": 76.0171, "matched_fragments": 120, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB1", "accession": "GCA_001922305.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 75.9762, "matched_fragments": 142, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB-1", "accession": "GCA_900108255.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 75.9686, "matched_fragments": 143, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloversatilis thermotolerans", "strain": "strain=3t", "accession": "GCA_000372885.1", "taxid": 1346290, "species_taxid": 1346290, "relation_to_type": "type", "validated": true, "ani": 75.9349, "matched_fragments": 118, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium sinusclupearum", "strain": "strain=MWU13-2610", "accession": "GCA_002902845.1", "taxid": 2077146, "species_taxid": 2077146, "relation_to_type": "type", "validated": true, "ani": 75.9237, "matched_fragments": 98, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuricella denitrificans", "strain": "strain=skB26", "accession": "GCA_000297055.2", "taxid": 649841, "species_taxid": 649841, "relation_to_type": "type", "validated": true, "ani": 75.8875, "matched_fragments": 74, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus nasutitermitis", "strain": "strain=CC-YHH838", "accession": "GCA_004801295.1", "taxid": 2565930, "species_taxid": 2565930, "relation_to_type": "type", "validated": true, "ani": 75.881, "matched_fragments": 185, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia soli", "strain": "strain=R798", "accession": "GCA_016809835.2", "taxid": 2792854, "species_taxid": 2792854, "relation_to_type": "type", "validated": true, "ani": 75.8251, "matched_fragments": 115, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter cavernae", "strain": "strain=K1W11S-77", "accession": "GCA_003355495.1", "taxid": 2290923, "species_taxid": 2290923, "relation_to_type": "type", "validated": true, "ani": 75.7784, "matched_fragments": 126, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rivicola pingtungensis", "strain": "strain=DSM 29661", "accession": "GCA_003201855.1", "taxid": 1054498, "species_taxid": 1054498, "relation_to_type": "type", "validated": true, "ani": 75.7662, "matched_fragments": 99, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinimonas koreensis", "strain": "strain=DSM 17726", "accession": "GCA_000428465.1", "taxid": 356302, "species_taxid": 356302, "relation_to_type": "type", "validated": true, "ani": 75.7075, "matched_fragments": 180, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium aquaticum", "strain": "strain=DSM 19852", "accession": "GCA_021129195.1", "taxid": 467180, "species_taxid": 467180, "relation_to_type": "type", "validated": true, "ani": 75.6862, "matched_fragments": 126, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidiphilus thermophilus", "strain": "strain=JCM 19170", "accession": "GCA_001517365.1", "taxid": 876478, "species_taxid": 876478, "relation_to_type": "suspected-type", "validated": true, "ani": 75.6035, "matched_fragments": 67, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Accumulibacter contiguus", "strain": "", "accession": "GCA_012940005.1", "taxid": 2954381, "species_taxid": 2954381, "relation_to_type": "type", "validated": true, "ani": 75.4975, "matched_fragments": 80, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia caryophylli", "strain": "strain=DSM 50341", "accession": "GCA_007097545.1", "taxid": 28094, "species_taxid": 28094, "relation_to_type": "type", "validated": true, "ani": 75.4791, "matched_fragments": 114, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia caryophylli", "strain": "strain=Ballard 720", "accession": "GCA_002879875.1", "taxid": 28094, "species_taxid": 28094, "relation_to_type": "type", "validated": true, "ani": 75.4717, "matched_fragments": 115, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia caryophylli", "strain": "strain=HAMBI_2159", "accession": "GCA_003350265.1", "taxid": 28094, "species_taxid": 28094, "relation_to_type": "type", "validated": true, "ani": 75.4531, "matched_fragments": 117, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycetohabitans rhizoxinica", "strain": "strain=HKI 454", "accession": "GCA_000198775.1", "taxid": 412963, "species_taxid": 412963, "relation_to_type": "type", "validated": true, "ani": 75.4427, "matched_fragments": 76, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia caryophylli", "strain": "strain=LMG 2155", "accession": "GCA_902833925.1", "taxid": 28094, "species_taxid": 28094, "relation_to_type": "type", "validated": true, "ani": 75.4181, "matched_fragments": 117, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia glathei", "strain": "strain=LMG 14190", "accession": "GCA_000751215.2", "taxid": 60547, "species_taxid": 60547, "relation_to_type": "type", "validated": true, "ani": 75.3876, "matched_fragments": 172, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia glathei", "strain": "strain=DSM 50014", "accession": "GCA_000698595.1", "taxid": 60547, "species_taxid": 60547, "relation_to_type": "type", "validated": true, "ani": 75.385, "matched_fragments": 172, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella plicata", "strain": "strain=KCTC 12344", "accession": "GCA_014651435.1", "taxid": 321984, "species_taxid": 321984, "relation_to_type": "type", "validated": true, "ani": 75.3456, "matched_fragments": 116, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodothalassium salexigens", "strain": "strain=DSM 2132", "accession": "GCA_016583875.1", "taxid": 1086, "species_taxid": 1086, "relation_to_type": "type", "validated": true, "ani": 74.8532, "matched_fragments": 58, "total_fragments": 1988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodothalassium salexigens", "strain": "strain=DSM 2132", "accession": "GCA_004341375.1", "taxid": 1086, "species_taxid": 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