{
    "type": "genome",
    "identifier": "GCA_945902035.1",
    "organism": "Sandarakinorhabdus limnophila DSM 17366",
    "title": "Sandarakinorhabdus limnophila DSM 17366",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945902035.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110380040",
        "wgs_master": "CAMDMG000000000.1",
        "refseq_category": "na",
        "taxid": "1123240",
        "species_taxid": "210512",
        "organism_name": "Sandarakinorhabdus limnophila DSM 17366",
        "infraspecific_name": "",
        "isolate": "MoE-02may19-198",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/19",
        "asm_name": "MoE-02may19-198",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/902/035/GCA_945902035.1_MoE-02may19-198",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-19",
    "dateModified": "2022-09-19",
    "datePublished": "2022-09-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sandarakinorhabdus limnophila DSM 17366"
        ],
        "sample_taxid": [
            "1123240"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Austria"
        ],
        "sample_host_location_id": [],
        "data_size": "0.600 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2173840",
        "Number of Sequences": "213",
        "Longest Sequences (bp)": "60841",
        "N50 (bp)": "13174",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.8",
        "Number of CDSs": "1992",
        "Average Protein Length": "299.0",
        "Coding Ratio (%)": "82.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sandarakinorhabdus limnophila",
                "strain": "strain=DSM 17366",
                "accession": "GCA_000420765.1",
                "taxid": 210512,
                "species_taxid": 210512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.8863,
                "matched_fragments": 603,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sandarakinorhabdus oryzae",
                "strain": "strain=NM-18",
                "accession": "GCA_009733735.1",
                "taxid": 2675220,
                "species_taxid": 2675220,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5286,
                "matched_fragments": 501,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sandarakinorhabdus cyanobacteriorum",
                "strain": "strain=TH057",
                "accession": "GCA_002251755.1",
                "taxid": 1981098,
                "species_taxid": 1981098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7333,
                "matched_fragments": 537,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sandarakinorhabdus rubra",
                "strain": "strain=MO-4",
                "accession": "GCA_010994245.1",
                "taxid": 2672568,
                "species_taxid": 2672568,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6525,
                "matched_fragments": 428,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polymorphobacter fuscus",
                "strain": "strain=DSM 105347",
                "accession": "GCA_011927825.1",
                "taxid": 1439888,
                "species_taxid": 1439888,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5703,
                "matched_fragments": 305,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polymorphobacter multimanifer",
                "strain": "strain=DSM 102189",
                "accession": "GCA_014205635.1",
                "taxid": 1070431,
                "species_taxid": 1070431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0322,
                "matched_fragments": 293,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polymorphobacter multimanifer",
                "strain": "strain=JCM 18140",
                "accession": "GCA_014647295.1",
                "taxid": 1070431,
                "species_taxid": 1070431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9704,
                "matched_fragments": 265,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas morindae",
                "strain": "strain=NBD5",
                "accession": "GCA_023822065.1",
                "taxid": 1541170,
                "species_taxid": 1541170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1433,
                "matched_fragments": 169,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas profundi",
                "strain": "strain=LMO-1",
                "accession": "GCA_009739515.1",
                "taxid": 2681549,
                "species_taxid": 2681549,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0622,
                "matched_fragments": 174,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas azotifigens",
                "strain": "strain=NBRC 15497",
                "accession": "GCA_002091475.1",
                "taxid": 330920,
                "species_taxid": 330920,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9083,
                "matched_fragments": 171,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedomonas mirosovicensis",
                "strain": "strain=A1X5R2",
                "accession": "GCA_022569295.1",
                "taxid": 2908641,
                "species_taxid": 2908641,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8753,
                "matched_fragments": 120,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas folli",
                "strain": "strain=RHCKR7",
                "accession": "GCA_019429525.1",
                "taxid": 2862497,
                "species_taxid": 2862497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7948,
                "matched_fragments": 118,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blastochloris sulfoviridis",
                "strain": "strain=DSM 729",
                "accession": "GCA_008630065.1",
                "taxid": 50712,
                "species_taxid": 50712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0361,
                "matched_fragments": 88,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseococcus thiosulfatophilus",
                "strain": "strain=RB-3",
                "accession": "GCA_017311575.1",
                "taxid": 35813,
                "species_taxid": 35813,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9149,
                "matched_fragments": 86,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000420765.1",
                "gtdb_species": "s__Sandarakinorhabdus limnophila",
                "ani": 95.8863,
                "matched_fragments": 603,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sandarakinorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.49",
                "min_intra_species_ani": "96.49",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002280855.1",
                "gtdb_species": "s__Sandarakinorhabdus sp002280855",
                "ani": 94.2693,
                "matched_fragments": 599,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sandarakinorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.11",
                "min_intra_species_ani": "96.11",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000331225.1",
                "gtdb_species": "s__Sandarakinorhabdus sp000331225",
                "ani": 88.0223,
                "matched_fragments": 578,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sandarakinorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009733735.1",
                "gtdb_species": "s__Sandarakinorhabdus oryzae",
                "ani": 85.5196,
                "matched_fragments": 502,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sandarakinorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002251755.1",
                "gtdb_species": "s__Sandarakinorhabdus cyanobacteriorum",
                "ani": 83.7401,
                "matched_fragments": 536,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sandarakinorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.87",
                "min_intra_species_ani": "96.87",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018970445.1",
                "gtdb_species": "s__Sandarakinorhabdus sp018970445",
                "ani": 83.711,
                "matched_fragments": 538,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sandarakinorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010994245.1",
                "gtdb_species": "s__Sandarakinorhabdus rubra",
                "ani": 82.6539,
                "matched_fragments": 429,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sandarakinorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.509,
        "cell_length": -0.097,
        "doubling_h": null,
        "growth_tmp": 15.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2613739.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Sphingomonadales",
        "f__Sphingomonadaceae",
        "g__Sandarakinorhabdus",
        "s__Sandarakinorhabdus limnophila_A"
    ],
    "_genome_taxon": [
        "Sandarakinorhabdus",
        "limnophila",
        "DSM",
        "17366",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Sphingomonadales",
        "f__Sphingomonadaceae",
        "g__Sandarakinorhabdus",
        "s__Sandarakinorhabdus limnophila_A",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Sphingomonadales",
        "Sphingomonadaceae",
        "Sandarakinorhabdus",
        "Sandarakinorhabdus",
        "limnophila",
        "A"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}