{
    "type": "genome",
    "identifier": "GCA_945902865.1",
    "organism": "Chitinophaga pinensis",
    "title": "Chitinophaga pinensis",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945902865.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110379965",
        "wgs_master": "CAMDNB000000000.1",
        "refseq_category": "na",
        "taxid": "79329",
        "species_taxid": "79329",
        "organism_name": "Chitinophaga pinensis",
        "infraspecific_name": "",
        "isolate": "MiH-16apr19-173",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "MiH-16apr19-173",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/902/865/GCA_945902865.1_MiH-16apr19-173",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chitinophaga pinensis"
        ],
        "sample_taxid": [
            "79329"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "0.651 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2300764",
        "Number of Sequences": "113",
        "Longest Sequences (bp)": "115842",
        "N50 (bp)": "34212",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.6",
        "Number of CDSs": "1844",
        "Average Protein Length": "357.9",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Sediminibacterium salmoneum",
                "strain": "strain=NBRC 103935",
                "accession": "GCA_000511175.1",
                "taxid": 426421,
                "species_taxid": 426421,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 60,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrotalea sandarakina",
                "strain": "strain=DSM 23241",
                "accession": "GCA_003254115.1",
                "taxid": 1004304,
                "species_taxid": 1004304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0016,
                "matched_fragments": 59,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrotalea flava",
                "strain": "strain=CCUG 51397",
                "accession": "GCA_001623405.1",
                "taxid": 714549,
                "species_taxid": 714549,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 56,
                "total_fragments": 712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limnovirga soli",
                "strain": "strain=KCS-6",
                "accession": "GCA_013106755.1",
                "taxid": 2656915,
                "species_taxid": 2656915,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6486,
                "matched_fragments": 51,
                "total_fragments": 712,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrotalea lipotrueae",
                "strain": "strain=TMF_100",
                "accession": "GCA_019249625.1",
                "taxid": 2803817,
                "species_taxid": 2803817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5437,
                "matched_fragments": 62,
                "total_fragments": 712,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCA_003509845.1",
                "gtdb_species": "s__Sediminibacterium sp003509845",
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                "matched_fragments": 411,
                "total_fragments": 712,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903953815.1",
                "gtdb_species": "s__Sediminibacterium sp903953815",
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                "matched_fragments": 547,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.40",
                "min_intra_species_ani": "99.39",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_005800655.1",
                "gtdb_species": "s__Sediminibacterium sp005800655",
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                "matched_fragments": 498,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009920495.1",
                "gtdb_species": "s__Sediminibacterium sp009920495",
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                "matched_fragments": 475,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009693715.1",
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                "matched_fragments": 468,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903910765.1",
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                "matched_fragments": 463,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903824725.1",
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                "matched_fragments": 417,
                "total_fragments": 712,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.473,
        "doubling_h": null,
        "growth_tmp": 23.0,
        "optimum_tmp": 23.5,
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        "genome_size": 9127347.6,
        "gc_content": 45.2,
        "coding_genes": 7126.333,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 72.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Chitinophagales",
        "f__Chitinophagaceae",
        "g__Sediminibacterium",
        "s__Sediminibacterium sp003509845"
    ],
    "_genome_taxon": [
        "Chitinophaga",
        "pinensis",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Chitinophagales",
        "f__Chitinophagaceae",
        "g__Sediminibacterium",
        "s__Sediminibacterium sp003509845",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Chitinophagales",
        "Chitinophagaceae",
        "Sediminibacterium",
        "Sediminibacterium",
        "sp003509845"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}