{ "type": "genome", "identifier": "GCA_945902885.1", "organism": "Chitinophaga pinensis", "title": "Chitinophaga pinensis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945902885.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110379985", "wgs_master": "CAMDNS000000000.1", "refseq_category": "na", "taxid": "79329", "species_taxid": "79329", "organism_name": "Chitinophaga pinensis", "infraspecific_name": "", "isolate": "MiH-16apr19-390", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "MiH-16apr19-390", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/902/885/GCA_945902885.1_MiH-16apr19-390", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophaga pinensis" ], "sample_taxid": [ "79329" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic" ], "sample_host_location_id": [], "data_size": "0.794 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.58, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2824034", "Number of Sequences": "415", "Longest Sequences (bp)": "34356", "N50 (bp)": "7905", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.7", "Number of CDSs": "2053", "Average Protein Length": "322.7", "Coding Ratio (%)": "70.4", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 87.58, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_903893815.1", "gtdb_species": "s__UBA4416 sp903893815", "ani": 97.3694, "matched_fragments": 681, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__AKYH767;f__B-17BO;g__UBA4416", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.38", "min_intra_species_ani": "96.70", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.80", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_005800865.1", "gtdb_species": "s__UBA4416 sp005800865", "ani": 92.3998, "matched_fragments": 430, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__AKYH767;f__B-17BO;g__UBA4416", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016708845.1", "gtdb_species": "s__UBA4416 sp016708845", "ani": 91.9129, "matched_fragments": 604, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__AKYH767;f__B-17BO;g__UBA4416", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016711805.1", "gtdb_species": "s__UBA4416 sp016711805", "ani": 90.4962, "matched_fragments": 633, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__AKYH767;f__B-17BO;g__UBA4416", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002420145.1", "gtdb_species": "s__UBA4416 sp002420145", "ani": 81.7664, "matched_fragments": 486, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__AKYH767;f__B-17BO;g__UBA4416", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013823565.1", "gtdb_species": "s__UBA4416 sp013823565", "ani": 81.4696, "matched_fragments": 501, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__AKYH767;f__B-17BO;g__UBA4416", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016787365.1", "gtdb_species": "s__UBA4416 sp016787365", "ani": 81.1094, "matched_fragments": 332, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__AKYH767;f__B-17BO;g__UBA4416", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903928655.1", "gtdb_species": "s__UBA4416 sp903928655", "ani": 78.5305, "matched_fragments": 241, "total_fragments": 775, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__AKYH767;f__B-17BO;g__UBA4416", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.097, "cell_length": 0.473, "doubling_h": null, "growth_tmp": 23.0, "optimum_tmp": 23.5, "optimum_ph": 7.0, "genome_size": 9127347.6, "gc_content": 45.2, "coding_genes": 7126.333, "rRNA16S_genes": 6.0, "tRNA_genes": 72.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__B-17B0", "f__B-17BO", "g__UBA4416", "s__UBA4416 sp903893815" ], "_genome_taxon": [ "Chitinophaga", "pinensis", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__B-17B0", "f__B-17BO", "g__UBA4416", "s__UBA4416 sp903893815", "Bacteria", "Bacteroidota", "Bacteroidia", "B-17B0", "B-17BO", "UBA4416", "UBA4416", "sp903893815" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }