{
    "type": "genome",
    "identifier": "GCA_945902955.1",
    "organism": "Porphyromonas cangingivalis",
    "title": "Porphyromonas cangingivalis",
    "description": "derived from metagenome; genome length too large",
    "data type": "Genome sequencing and assembly",
    "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_945902955.1",
        "bioproject": "PRJEB35640",
        "biosample": "SAMEA110379953",
        "wgs_master": "CAMDNO000000000.1",
        "refseq_category": "na",
        "taxid": "36874",
        "species_taxid": "36874",
        "organism_name": "Porphyromonas cangingivalis",
        "infraspecific_name": "",
        "isolate": "MiH-14oct19-69",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/10",
        "asm_name": "MiH-14oct19-69",
        "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/902/955/GCA_945902955.1_MiH-14oct19-69",
        "excluded_from_refseq": "derived from metagenome; genome length too large",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-10",
    "dateModified": "2022-09-10",
    "datePublished": "2022-09-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Porphyromonas cangingivalis"
        ],
        "sample_taxid": [
            "36874"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "1.276 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 85.42,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4522156",
        "Number of Sequences": "292",
        "Longest Sequences (bp)": "102723",
        "N50 (bp)": "21538",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.8",
        "Number of CDSs": "3254",
        "Average Protein Length": "371.5",
        "Coding Ratio (%)": "80.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paludibacter propionicigenes",
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                "accession": "GCA_000183135.1",
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                "species_taxid": 185300,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1371,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
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            {
                "accession": "GCA_903911085.1",
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                "mean_intra_species_af": "0.95",
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                "num_clustered_genomes": 3,
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                "total_fragments": 1371,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            {
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                "matched_fragments": 194,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
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            },
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": -0.097,
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        "motility": 0.0,
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        "facultative_respiration": 0.0,
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        "bacillus_cell_shape": 1.0,
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    "_gtdb_taxon": [
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        "c__Bacteroidia",
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        "f__Paludibacteraceae",
        "g__Paludibacter",
        "s__Paludibacter sp945902955"
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    "_genome_taxon": [
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        "cangingivalis",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Paludibacteraceae",
        "g__Paludibacter",
        "s__Paludibacter sp945902955",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Paludibacteraceae",
        "Paludibacter",
        "Paludibacter",
        "sp945902955"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}