{ "type": "genome", "identifier": "GCA_945903285.1", "organism": "Bifidobacterium breve", "title": "Bifidobacterium breve", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945903285.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110380511", "wgs_master": "CAMDNV000000000.1", "refseq_category": "na", "taxid": "1685", "species_taxid": "1685", "organism_name": "Bifidobacterium breve", "infraspecific_name": "", "isolate": "TrH-03may19-99", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/15", "asm_name": "TrH-03may19-99", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/903/285/GCA_945903285.1_TrH-03may19-99", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-15", "dateModified": "2022-09-15", "datePublished": "2022-09-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium breve" ], "sample_taxid": [ "1685" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria" ], "sample_host_location_id": [], "data_size": "0.351 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 77.78, "contamination": 5.73, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { 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"gtdb_species": "s__F1-60-MAGs027 sp010025655", "ani": 77.6394, "matched_fragments": 91, "total_fragments": 343, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__F1-60-MAGs027", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.13", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.70", "num_clustered_genomes": 11, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.022, "cell_length": 0.328, "doubling_h": 0.178, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 6.377, "genome_size": 2374244.56, "gc_content": 58.777, "coding_genes": 1891.625, "rRNA16S_genes": 2.385, "tRNA_genes": 54.231, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, 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