{ "type": "genome", "identifier": "GCA_945903435.1", "organism": "Methylomagnum ishizawai", "title": "Methylomagnum ishizawai", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945903435.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110380634", "wgs_master": "CAMDNU000000000.1", "refseq_category": "na", "taxid": "1760988", "species_taxid": "1760988", "organism_name": "Methylomagnum ishizawai", "infraspecific_name": "", "isolate": "ZH-03apr19-71", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "ZH-03apr19-71", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/903/435/GCA_945903435.1_ZH-03apr19-71", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylomagnum ishizawai" ], "sample_taxid": [ "1760988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.488 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1726258", "Number of Sequences": "192", "Longest Sequences (bp)": "67855", "N50 (bp)": "11936", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.5", "Number of CDSs": "1588", "Average Protein Length": "291.8", "Coding Ratio (%)": "80.5", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_014191975.1", "gtdb_species": "s__UBA10906 sp014191975", "ani": 97.7177, "matched_fragments": 422, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_903870545.1", "gtdb_species": "s__UBA10906 sp903870545", "ani": 81.6882, "matched_fragments": 300, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.78", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_903889445.1", "gtdb_species": "s__UBA10906 sp903889445", "ani": 81.3077, "matched_fragments": 295, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903847275.1", "gtdb_species": "s__UBA10906 sp903847275", "ani": 81.1036, "matched_fragments": 292, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.83", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903867225.1", "gtdb_species": "s__UBA10906 sp903867225", "ani": 81.1006, "matched_fragments": 320, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903848935.1", "gtdb_species": "s__UBA10906 sp903848935", "ani": 80.4125, "matched_fragments": 295, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_903904275.1", "gtdb_species": "s__UBA10906 sp903904275", "ani": 79.8722, "matched_fragments": 268, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903876445.1", "gtdb_species": "s__UBA10906 sp903876445", "ani": 79.7564, "matched_fragments": 258, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903877065.1", "gtdb_species": "s__UBA10906 sp903877065", "ani": 79.4404, "matched_fragments": 239, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903834465.1", "gtdb_species": "s__UBA10906 sp903834465", "ani": 79.2924, "matched_fragments": 253, "total_fragments": 492, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__UBA10906", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 5480099.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Methylococcales", "f__Methylomonadaceae", "g__UBA10906", "s__UBA10906 sp014191975" ], "_genome_taxon": [ "Methylomagnum", "ishizawai", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Methylococcales", "f__Methylomonadaceae", "g__UBA10906", "s__UBA10906 sp014191975", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Methylococcales", "Methylomonadaceae", "UBA10906", "UBA10906", "sp014191975" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }