{ "type": "genome", "identifier": "GCA_945905735.1", "organism": "Prosthecobacter debontii", "title": "Prosthecobacter debontii", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945905735.1", "bioproject": "PRJEB35640", "biosample": "SAMEA110380595", "wgs_master": "CAMDQC000000000.1", "refseq_category": "na", "taxid": "48467", "species_taxid": "48467", "organism_name": "Prosthecobacter debontii", "infraspecific_name": "", "isolate": "ZE-13nov19-293", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "ZE-13nov19-293", "submitter": "BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/905/735/GCA_945905735.1_ZE-13nov19-293", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Prosthecobacter debontii" ], "sample_taxid": [ "48467" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "1.460 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.07, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length 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"below_threshold" }, { "organism_name": "Chthoniobacter flavus", "strain": "strain=Ellin428", "accession": "GCA_000173075.1", "taxid": 191863, "species_taxid": 191863, "relation_to_type": "type", "validated": true, "ani": 75.7481, "matched_fragments": 162, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimicrobium gellanilyticum", "strain": "strain=DSM 25532", "accession": "GCA_003315205.1", "taxid": 748857, "species_taxid": 748857, "relation_to_type": "type", "validated": true, "ani": 75.5955, "matched_fragments": 58, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter fusiformis", "strain": "strain=ATCC 25309", "accession": "GCA_004364345.1", "taxid": 48464, "species_taxid": 48464, "relation_to_type": "type", "validated": true, "ani": 75.4127, "matched_fragments": 52, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter yonseiensis", "strain": "strain=JCM 18052", "accession": "GCA_016595465.1", "taxid": 1144680, "species_taxid": 1144680, "relation_to_type": "type", "validated": true, "ani": 75.2924, "matched_fragments": 58, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.07, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_005791535.1", "gtdb_species": "s__SXWH01 sp005791535", "ani": 78.576, "matched_fragments": 513, "total_fragments": 1604, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Chthoniobacterales;f__Chthoniobacteraceae;g__SXWH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903929475.1", "gtdb_species": "s__SXWH01 sp903929475", "ani": 77.6278, "matched_fragments": 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"SXWH01", "SXWH01", "sp945905735" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }