{ "type": "genome", "identifier": "GCA_945913455.1", "organism": "uncultured Porphyromonadaceae bacterium", "title": "uncultured Porphyromonadaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945913455.1", "bioproject": "PRJEB53600", "biosample": "SAMEA110411865", "wgs_master": "CAMEDH000000000.1", "refseq_category": "na", "taxid": "348578", "species_taxid": "348578", "organism_name": "uncultured Porphyromonadaceae bacterium", "infraspecific_name": "", "isolate": "SRR11489776_bin.60_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "SRR11489776_bin.60_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/913/455/GCA_945913455.1_SRR11489776_bin.60_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Porphyromonadaceae bacterium" ], "sample_taxid": [ "348578" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.614 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 90.68, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2144473", "Number of Sequences": "252", "Longest Sequences (bp)": "45994", "N50 (bp)": "9938", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.0", "Number of CDSs": "1548", "Average Protein Length": "341.0", "Coding Ratio (%)": "73.8", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 90.68, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000437495.1", "gtdb_species": "s__CAG-485 sp000437495", "ani": 99.4104, "matched_fragments": 539, "total_fragments": 590, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.56", "min_intra_species_ani": "99.54", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_900541835.1", "gtdb_species": "s__CAG-485 sp900541835", "ani": 78.6341, "matched_fragments": 230, "total_fragments": 590, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "98.95", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905212215.1", "gtdb_species": "s__CAG-485 sp905212215", "ani": 77.3046, "matched_fragments": 122, "total_fragments": 590, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900760735.1", "gtdb_species": "s__CAG-485 sp900760735", "ani": 77.0067, "matched_fragments": 61, "total_fragments": 590, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.21", "min_intra_species_ani": "95.16", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.77", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900760885.1", "gtdb_species": "s__CAG-485 sp900760885", "ani": 76.6724, "matched_fragments": 53, "total_fragments": 590, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900547755.1", "gtdb_species": "s__CAG-485 sp900547755", "ani": 76.5556, "matched_fragments": 57, "total_fragments": 590, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_014800845.1", "gtdb_species": "s__CAG-485 sp014800845", "ani": 76.4908, "matched_fragments": 60, "total_fragments": 590, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900761855.1", "gtdb_species": "s__CAG-485 sp900761855", "ani": 76.3256, "matched_fragments": 70, "total_fragments": 590, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.296, "cell_length": 0.109, "doubling_h": 0.809, "growth_tmp": 36.714, "optimum_tmp": 36.937, "optimum_ph": 7.462, "genome_size": 2637645.685, "gc_content": 46.475, "coding_genes": 2143.52, "rRNA16S_genes": 2.5, "tRNA_genes": 49.6, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.1, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Muribaculaceae", "g__Lepagella", "s__Lepagella sp000437495" ], "_genome_taxon": [ "uncultured", "Porphyromonadaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Muribaculaceae", "g__Lepagella", "s__Lepagella sp000437495", "Bacteria", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Muribaculaceae", "Lepagella", "Lepagella", "sp000437495" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }