<?xml version="1.0" ?>
<BioSampleSet><BioSample access="public" publication_date="2022-07-26T00:00:00.000" last_update="2022-07-30T07:47:49.000" submission_date="2022-07-27T08:31:36.490" id="29991532" accession="SAMEA110414524">   <Ids>     <Id db="BioSample" is_primary="1">SAMEA110414524</Id>     <Id db="SRA">ERS12512878</Id>   </Ids>   <Description>     <Title>Metagenome-assembled genome: SRR15057927_bin.12_metaWRAP_v1.3_MAG</Title>     <Organism taxonomy_id="512296" taxonomy_name="uncultured Phascolarctobacterium sp.">       <OrganismName>uncultured Phascolarctobacterium sp.</OrganismName>     </Organism>     <Comment>       <Paragraph>This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15057927 of study SRP327064.</Paragraph>     </Comment>   </Description>   <Owner>     <Name>EBI</Name>   </Owner>   <Models>     <Model>Generic</Model>   </Models>   <Package display_name="Generic">Generic.1.0</Package>   <Attributes>     <Attribute attribute_name="ENA-CHECKLIST">ERC000047</Attribute>     <Attribute attribute_name="ENA-FIRST-PUBLIC">2022-07-26</Attribute>     <Attribute attribute_name="ENA-LAST-UPDATE">2022-07-26</Attribute>     <Attribute attribute_name="External Id">SAMEA110414524</Attribute>     <Attribute attribute_name="INSDC center alias">EMG</Attribute>     <Attribute attribute_name="INSDC center name">EMG</Attribute>     <Attribute attribute_name="INSDC first public">2022-07-26T00:34:24Z</Attribute>     <Attribute attribute_name="INSDC last update">2022-07-26T00:34:24Z</Attribute>     <Attribute attribute_name="INSDC status">public</Attribute>     <Attribute attribute_name="Submitter Id">SRR15057927_bin.12_metaWRAP_v1.3_MAG</Attribute>     <Attribute attribute_name="assembly quality">Many fragments with little to no review of assembly other than reporting of standard assembly statistics</Attribute>     <Attribute attribute_name="assembly software">metaSPAdes v3.15.3</Attribute>     <Attribute attribute_name="binning parameters">MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.</Attribute>     <Attribute attribute_name="binning software">metaWRAP v1.3</Attribute>     <Attribute attribute_name="broad-scale environmental context" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">Pig digestive system</Attribute>     <Attribute attribute_name="broker name">EMG broker account, EMBL-EBI</Attribute>     <Attribute attribute_name="collection date" harmonized_name="collection_date" display_name="collection date">2015-01-01</Attribute>     <Attribute attribute_name="completeness score">99.98</Attribute>     <Attribute attribute_name="completeness software">CheckM</Attribute>     <Attribute attribute_name="contamination score">2.1</Attribute>     <Attribute attribute_name="environmental medium" harmonized_name="env_medium" display_name="environmental medium">Feces</Attribute>     <Attribute attribute_name="geographic location (country and/or sea)" harmonized_name="geo_loc_name" display_name="geographic location">France</Attribute>     <Attribute attribute_name="geographic location (latitude)">not provided</Attribute>     <Attribute attribute_name="geographic location (longitude)">not provided</Attribute>     <Attribute attribute_name="investigation type" harmonized_name="investigation_type" display_name="investigation type">metagenome-assembled genome</Attribute>     <Attribute attribute_name="isolation_source" harmonized_name="isolation_source" display_name="isolation source">pig gut metagenome</Attribute>     <Attribute attribute_name="local environmental context">Intestine</Attribute>     <Attribute attribute_name="metagenomic source">pig gut metagenome</Attribute>     <Attribute attribute_name="project name" harmonized_name="project_name" display_name="project name">The question of the presence of phage encoded antibiotic-resistance genes was revisited here by sampling 14 pig fecal samples in various farms, and performing shotgun, deep sequencing on both total microbiota and highly purified viral fractions. The virome assemblies were sufficiently comprehensive to allow in addition the discovery of two new and prevailing viral taxa.</Attribute>     <Attribute attribute_name="sample derived from">SAMN20056612</Attribute>     <Attribute attribute_name="sample name" harmonized_name="sample_name" display_name="sample name">SRR15057927_bin.12_metaWRAP_v1.3_MAG</Attribute>     <Attribute attribute_name="sequencing method">Illumina HiSeq 3000</Attribute>     <Attribute attribute_name="taxonomic classification">The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Phascolarctobacterium;s__</Attribute>     <Attribute attribute_name="taxonomic identity marker">multi-marker approach</Attribute>   </Attributes>   <Status status="live" when="2022-07-28T08:11:12.897"/> </BioSample> </BioSampleSet>
