{ "type": "genome", "identifier": "GCA_945923685.1", "organism": "Campylobacter lanienae", "title": "Campylobacter lanienae", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_945923685.1", "bioproject": "PRJEB53600", "biosample": "SAMEA110411735", "wgs_master": "CAMELL000000000.1", "refseq_category": "na", "taxid": "75658", "species_taxid": "75658", "organism_name": "Campylobacter lanienae", "infraspecific_name": "", "isolate": "SRR11489748_bin.72_metaWRAP_v1.3_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/10", "asm_name": "SRR11489748_bin.72_metaWRAP_v1.3_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/945/923/685/GCA_945923685.1_SRR11489748_bin.72_metaWRAP_v1.3_MAG", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-10", "dateModified": "2022-09-10", "datePublished": "2022-09-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacter lanienae" ], "sample_taxid": [ "75658" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.332 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.62, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1193550", "Number of Sequences": "208", "Longest Sequences (bp)": "22147", "N50 (bp)": "6332", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.9", "Number of CDSs": "1075", "Average Protein Length": "279.6", "Coding Ratio (%)": "75.6", "Number of rRNAs": "0", "Number of tRNAs": "7", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter lanienae", "strain": "strain=NCTC 13004", "accession": "GCA_002139935.1", "taxid": 75658, "species_taxid": 75658, "relation_to_type": "type", "validated": true, "ani": 95.8386, "matched_fragments": 269, "total_fragments": 295, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter hyointestinalis subsp. lawsonii", "strain": "strain=CHY5", "accession": "GCA_003289475.1", "taxid": 91353, "species_taxid": 198, "relation_to_type": "type", "validated": true, "ani": 82.0272, "matched_fragments": 119, "total_fragments": 295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter hyointestinalis subsp. lawsonii", "strain": "strain=CCUG 34538", "accession": "GCA_008802075.1", "taxid": 91353, "species_taxid": 198, "relation_to_type": "type", "validated": true, "ani": 81.9198, "matched_fragments": 122, "total_fragments": 295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter hyointestinalis subsp. lawsonii", "strain": "strain=CHY5", "accession": "GCA_013372165.1", "taxid": 91353, "species_taxid": 198, "relation_to_type": "type", "validated": true, "ani": 81.8002, "matched_fragments": 125, "total_fragments": 295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter hyointestinalis subsp. hyointestinalis", "strain": "strain=DSM 19053", "accession": "GCA_000705275.1", "taxid": 91352, "species_taxid": 198, "relation_to_type": "type", "validated": true, "ani": 78.3674, "matched_fragments": 93, "total_fragments": 295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter iguaniorum", "strain": "strain=1485E", "accession": "GCA_000736415.1", "taxid": 1244531, "species_taxid": 1244531, "relation_to_type": "type", "validated": true, "ani": 77.7731, "matched_fragments": 87, "total_fragments": 295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter fetus subsp. venerealis", "strain": "strain=NCTC 10354", "accession": "GCA_008271385.1", "taxid": 32020, "species_taxid": 196, "relation_to_type": "type", "validated": true, "ani": 77.7391, "matched_fragments": 73, "total_fragments": 295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter fetus subsp. fetus", "strain": "strain=NCTC10842", "accession": "GCA_900475935.1", "taxid": 32019, "species_taxid": 196, "relation_to_type": "type", "validated": true, "ani": 77.6983, "matched_fragments": 75, "total_fragments": 295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter fetus subsp. fetus", "strain": "strain=CCUG 6823 AT", "accession": "GCA_008693125.1", "taxid": 32019, "species_taxid": 196, "relation_to_type": "type", "validated": true, "ani": 77.6041, "matched_fragments": 76, "total_fragments": 295, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 76.62, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_002139935.1", "gtdb_species": "s__Campylobacter lanienae", "ani": 95.8386, "matched_fragments": 269, "total_fragments": 295, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "97.32", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 30, "status": "conclusive" }, { "accession": "GCF_002139915.1", 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"f__Campylobacteraceae", "g__Campylobacter", "s__Campylobacter lanienae", "Bacteria", "Campylobacterota", "Campylobacteria", "Campylobacterales", "Campylobacteraceae", "Campylobacter", "Campylobacter", "lanienae" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }